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See other CBFA2T3 CNV Assays ›
Gene Symbol
CBFA2T3
Assay Reference Genome
Location

Chr.16:88876472 on build GRCh38
Cytoband
16q24.3
Assay ID Hs02514962_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 863

Gene Name:

 CBFA2/RUNX1 translocation partner 3

Gene Aliases:

 ETO2, MTG16, MTGR2, RUNX1T3, ZMYND4

Location:

 Chr.16:88874855-88977198 on Build GRCh38

Assay Gene Location:

 Within Exon 15
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CBFA2T3 NM_005187.5 12 2755 NP_005178.4
NM_175931.2 11 2421 NP_787127.1
XM_005256323.4 11 2733 XP_005256380.1
AB010419.1 12 2624 BAA29061.1
AB010420.1 11 2421 BAA29062.1
AK090985.1 3 1433
AK097904.1 2 1571
BC047019.1 12 2605
BC062624.1 12 2625 AAH62624.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv37n68 Chr.16:88767460 - 88944903 on Build GRCh38 Loss CDT1 CBFA2T3 APRT LOC105371409 PIEZO1 GALNS LOC100129697 TRAPPC2L LOC101927793 PABPN1L LOC107987238
nsv1063024 Chr.16:88707330 - 89238482 on Build GRCh38 Gain ACSF3 CDT1 CBFA2T3 MIR4722 CTU2 LINC00304 APRT LOC105371409 PIEZO1 GALNS LOC100129697 TRAPPC2L PABPN1L CDH15 SLC22A31 LOC400558 LOC339059 LOC101927793 LOC100289580 ZNF778 LOC107987238
nsv1928 Chr.16:88865211 - 88897277 on Build GRCh38 Insertion CBFA2T3 LOC101927793 PABPN1L
dgv507n67 Chr.16:88874423 - 88876971 on Build GRCh38 Gain CBFA2T3
nsv471115 Chr.16:88801844 - 89197442 on Build GRCh38 Loss ACSF3 CDT1 CBFA2T3 LINC00304 APRT LOC105371409 GALNS LOC100129697 TRAPPC2L PABPN1L CDH15 SLC22A31 LOC400558 LOC101927793 LOC107987238
nsv573674 Chr.16:88738775 - 89325907 on Build GRCh38 Gain ACSF3 CDT1 CBFA2T3 LINC00304 LOC105371414 APRT LOC105371409 PIEZO1 GALNS LOC100129697 TRAPPC2L PABPN1L CDH15 LOC100287036 SLC22A31 LOC400558 LOC339059 LOC101927793 ANKRD11 LOC100289580 ZNF778 LOC107987238
esv3639555 Chr.16:88745961 - 88899576 on Build GRCh38 Gain CDT1 CBFA2T3 APRT PIEZO1 GALNS TRAPPC2L LOC101927793 PABPN1L LOC107987238
nsv521217 Chr.16:88805821 - 89174375 on Build GRCh38 Loss ACSF3 CDT1 CBFA2T3 LINC00304 APRT LOC105371409 GALNS LOC100129697 TRAPPC2L PABPN1L CDH15 LOC400558 LOC101927793 LOC107987238
nsv952071 Chr.16:88790893 - 89019992 on Build GRCh38 Deletion CDT1 CBFA2T3 APRT LOC105371409 GALNS LOC100129697 TRAPPC2L LOC101927793 PABPN1L LOC107987238
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss ACSF3 CBFA2T3 LOC105371409 LOC107984817 CDH15 LOC100287036 RPL13 LOC400558 CPNE7 GAS8-AS1 CYBA CENPBD1 LOC105371419 ANKRD11 CDT1 LINC00304 DEF8 CDK10 CHMP1A LOC100129697 TUBB8P7 RNF166 TCF25 SNAI3 VPS9D1 DPEP1 MVD SPG7 LOC101927793 TUBB3 URAHP ZNF778 FANCA AFG3L1P CTU2 GAS8 APRT FAM157C SPATA33 TRAPPC2L SPIRE2 DBNDD1 IL17C LOC100289580 LOC107987238 VPS9D1-AS1 MIR4722 MC1R LOC105371414 LOC101927817 PRDM7 PIEZO1 GALNS SPATA2L PABPN1L SLC22A31 ZNF276 LOC339059 SNORD68 SNAI3-AS1
esv3639561 Chr.16:88837996 - 88882065 on Build GRCh38 Gain CBFA2T3 GALNS TRAPPC2L PABPN1L
dgv3065n100 Chr.16:88711587 - 88927172 on Build GRCh38 Gain CDT1 CBFA2T3 MIR4722 CTU2 APRT PIEZO1 GALNS TRAPPC2L PABPN1L LOC339059 LOC101927793 LOC100289580 LOC107987238

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More Information


Additional Information:

For this assay, SNP(s) [rs144235953] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

transcription cofactor

Gene Ontology Categories:

Function(s) Process(es)


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