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See other CBFA2T3 CNV Assays ›
Gene Symbol
CBFA2T3
Assay Reference Genome
Location

Chr.16:88876472 on build GRCh38
Cytoband
16q24.3
Assay ID Hs02514962_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 863

Gene Name:

 CBFA2/RUNX1 translocation partner 3

Gene Aliases:

 ETO2, MTG16, MTGR2, RUNX1T3, ZMYND4

Location:

 Chr.16:88874855-88977198 on Build GRCh38

Assay Gene Location:

 Within Exon 15
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CBFA2T3 NM_005187.5 12 2755 NP_005178.4
NM_175931.2 11 2421 NP_787127.1
XM_005256323.4 11 2733 XP_005256380.1
AB010419.1 12 2624 BAA29061.1
AB010420.1 11 2421 BAA29062.1
AK090985.1 3 1433
AK097904.1 2 1571
BC047019.1 12 2605
BC062624.1 12 2625 AAH62624.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv37n68 Chr.16:88767460 - 88944903 on Build GRCh38 Loss PIEZO1 TRAPPC2L PABPN1L LOC100129697 LOC107987238 GALNS APRT CDT1 LOC105371409 CBFA2T3 LOC101927793
nsv1063024 Chr.16:88707330 - 89238482 on Build GRCh38 Gain LOC339059 TRAPPC2L SLC22A31 MIR4722 LINC00304 LOC400558 APRT ZNF778 LOC105371409 CBFA2T3 LOC101927793 CTU2 LOC100289580 PIEZO1 PABPN1L ACSF3 LOC100129697 LOC107987238 GALNS CDT1 CDH15
nsv1928 Chr.16:88865211 - 88897277 on Build GRCh38 Insertion PABPN1L CBFA2T3 LOC101927793
nsv471115 Chr.16:88801844 - 89197442 on Build GRCh38 Loss TRAPPC2L SLC22A31 LINC00304 LOC400558 APRT LOC105371409 CBFA2T3 LOC101927793 PABPN1L ACSF3 LOC100129697 LOC107987238 GALNS CDT1 CDH15
dgv507n67 Chr.16:88874423 - 88876971 on Build GRCh38 Gain CBFA2T3
nsv573674 Chr.16:88738775 - 89325907 on Build GRCh38 Gain ANKRD11 LOC339059 TRAPPC2L SLC22A31 LINC00304 LOC400558 APRT LOC105371414 ZNF778 LOC105371409 CBFA2T3 LOC100287036 LOC101927793 LOC100289580 PIEZO1 PABPN1L ACSF3 LOC100129697 LOC107987238 GALNS CDT1 CDH15
esv3639555 Chr.16:88745961 - 88899576 on Build GRCh38 Gain PIEZO1 TRAPPC2L PABPN1L LOC107987238 GALNS APRT CDT1 CBFA2T3 LOC101927793
nsv952071 Chr.16:88790893 - 89019992 on Build GRCh38 Deletion TRAPPC2L PABPN1L LOC100129697 LOC107987238 GALNS APRT CDT1 LOC105371409 CBFA2T3 LOC101927793
nsv521217 Chr.16:88805821 - 89174375 on Build GRCh38 Loss TRAPPC2L LINC00304 LOC400558 APRT LOC105371409 CBFA2T3 LOC101927793 PABPN1L ACSF3 LOC100129697 LOC107987238 GALNS CDT1 CDH15
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss ANKRD11 PRDM7 SNORD68 TUBB3 GAS8-AS1 CHMP1A MC1R PIEZO1 PABPN1L RNF166 LOC100129697 FANCA CDT1 CYBA LOC339059 LINC00304 LOC400558 LOC105371414 ZNF778 LOC105371409 LOC107984817 LOC101927793 FAM157C TCF25 DEF8 SLC22A31 MIR4722 CENPBD1 GAS8 SNAI3-AS1 AFG3L1P RPL13 SPIRE2 TUBB8P7 LOC100289580 VPS9D1-AS1 IL17C CDH15 CDK10 TRAPPC2L SPATA33 VPS9D1 APRT DPEP1 CPNE7 CBFA2T3 LOC100287036 CTU2 SPG7 ACSF3 LOC107987238 DBNDD1 SNAI3 GALNS SPATA2L LOC105371419 MVD LOC101927817 ZNF276 URAHP
esv3639561 Chr.16:88837996 - 88882065 on Build GRCh38 Gain TRAPPC2L PABPN1L GALNS CBFA2T3
nsv1061256 Chr.16:88711587 - 89013365 on Build GRCh38 Gain LOC339059 TRAPPC2L MIR4722 APRT LOC105371409 CBFA2T3 LOC101927793 CTU2 LOC100289580 PIEZO1 PABPN1L LOC100129697 LOC107987238 GALNS CDT1

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More Information


Additional Information:

For this assay, SNP(s) [rs144235953] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

transcription cofactor

Gene Ontology Categories:

Function(s) Process(es)


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