Hs02521562_cn

• Gene Symbol: PCDHA1
• Assay Reference Genome Location: Chr.5:140858408 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56147
• Gene Name: protocadherin alpha 1
• Gene Aliases: PCDH-ALPHA1
• Location: Chr.5:140786136-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA1	NM_018900.3			NP_061723.1
	NM_031411.2			NP_113599.1
	AF152305.1			AAD43699.1
	AF169695.1			AAF89692.1

Target Gene Details

• Entrez Gene ID: 56139
• Gene Name: protocadherin alpha 10
• Gene Aliases: CNR8, CNRN8, CNRS8, CRNR8, PCDH-ALPHA10
• Location: Chr.5:140855883-141012344 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA10	NM_018901.3			NP_061724.1
	NM_031859.2	1	2526	NP_114065.1
	NM_031860.2			NP_114066.1
	AF152306.1			AAD43700.1
	AF152475.1	1	2360	AAD43736.1
	AF169689.1			AAF89329.1
	BC130447.1

Target Gene Details

• Entrez Gene ID: 56146
• Gene Name: protocadherin alpha 2
• Gene Aliases: PCDH-ALPHA2
• Location: Chr.5:140794859-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA2	NM_018905.2			NP_061728.1
	AF152310.1			AAD43704.1

Target Gene Details

• Entrez Gene ID: 56145
• Gene Name: protocadherin alpha 3
• Gene Aliases: PCDH-ALPHA3
• Location: Chr.5:140801198-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA3	NM_018906.2			NP_061729.1
	AF152311.1			AAD43705.1

Target Gene Details

• Entrez Gene ID: 56144
• Gene Name: protocadherin alpha 4
• Gene Aliases: CNR1, CNRN1, CRNR1, PCDH-ALPHA4
• Location: Chr.5:140807074-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA4	NM_018907.3			NP_061730.1
	AB208925.1			BAD92162.1
	AF152312.1			AAD43706.1

Target Gene Details

• Entrez Gene ID: 56143
• Gene Name: protocadherin alpha 5
• Gene Aliases: CNR6, CNRN6, CNRS6, CRNR6, PCDH-ALPHA5
• Location: Chr.5:140821776-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA5	NM_018908.2			NP_061731.1
	AB208863.1			BAD92100.1
	AF152313.1			AAD43707.1
	BC033735.1			AAH33735.1

Target Gene Details

• Entrez Gene ID: 56142
• Gene Name: protocadherin alpha 6
• Gene Aliases: CNR2, CNRN2, CNRS2, CRNR2, PCDH-ALPHA6
• Location: Chr.5:140827922-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA6	NM_018909.3			NP_061732.1
	NM_031849.2			NP_114037.1
	AB209205.1			BAD92442.1
	AF152314.1			AAD43708.1
	AF169694.1			AAF89691.1
	BC036674.2			AAH36674.1

Target Gene Details

• Entrez Gene ID: 56141
• Gene Name: protocadherin alpha 7
• Gene Aliases: CNR4, CNRN4, CNRS4, CRNR4, PCDH-ALPHA7
• Location: Chr.5:140834384-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA7	NM_018910.2			NP_061733.1
	AF152315.1			AAD43709.1

Target Gene Details

• Entrez Gene ID: 56140
• Gene Name: protocadherin alpha 8
• Gene Aliases: PCDH-ALPHA8
• Location: Chr.5:140841322-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA8	NM_018911.2			NP_061734.1
	AF152316.1			AAD43710.1

Target Gene Details

• Entrez Gene ID: 9752
• Gene Name: protocadherin alpha 9
• Gene Aliases: PCDH-ALPHA9
• Location: Chr.5:140847772-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA9	NM_031857.1			NP_114063.1
	AF152317.1			AAD43711.1
	AJ007610.1			CAC22257.1
	AK314303.1
	BC104802.1			AAI04803.1
	BC104804.1			AAI04805.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv3606958	Chr.5:140842689 - 140859762 on Build GRCh38	Loss	PCDHA2 PCDHA8 PCDHA10 PCDHA5 PCDHA9 PCDHA3 PCDHA7 PCDHA6 PCDHA4 PCDHA1
nsv819207	Chr.5:140842721 - 140859461 on Build GRCh38	Gain	PCDHA2 PCDHA8 PCDHA10 PCDHA5 PCDHA9 PCDHA3 PCDHA7 PCDHA6 PCDHA4 PCDHA1
nsv442962	Chr.5:140844251 - 140864171 on Build GRCh38	Loss	PCDHA2 PCDHA8 PCDHA10 PCDHA5 PCDHA9 PCDHA3 PCDHA7 PCDHA6 PCDHA4 PCDHA1
esv33939	Chr.5:140837491 - 140859238 on Build GRCh38	Gain+Loss	PCDHA2 PCDHA8 PCDHA10 PCDHA5 PCDHA9 PCDHA3 PCDHA7 PCDHA6 PCDHA4 PCDHA1
esv3566721	Chr.5:140840563 - 140861415 on Build GRCh38	Deletion	PCDHA2 PCDHA8 PCDHA10 PCDHA5 PCDHA9 PCDHA3 PCDHA7 PCDHA6 PCDHA4 PCDHA1
nsv514324	Chr.5:140844231 - 140859031 on Build GRCh38	Loss	PCDHA2 PCDHA8 PCDHA10 PCDHA5 PCDHA9 PCDHA3 PCDHA7 PCDHA6 PCDHA4 PCDHA1
dgv971n67	Chr.5:140842564 - 140859431 on Build GRCh38	Loss	PCDHA2 PCDHA8 PCDHA10 PCDHA5 PCDHA9 PCDHA3 PCDHA7 PCDHA6 PCDHA4 PCDHA1
nsv10753	Chr.5:140842575 - 140859579 on Build GRCh38	Gain	PCDHA2 PCDHA8 PCDHA10 PCDHA5 PCDHA9 PCDHA3 PCDHA7 PCDHA6 PCDHA4 PCDHA1
dgv1043e199	Chr.5:140842260 - 140861207 on Build GRCh38	Deletion	PCDHA2 PCDHA8 PCDHA10 PCDHA5 PCDHA9 PCDHA3 PCDHA7 PCDHA6 PCDHA4 PCDHA1
dgv3182n106	Chr.5:140842552 - 140859353 on Build GRCh38	Deletion	PCDHA2 PCDHA8 PCDHA10 PCDHA5 PCDHA9 PCDHA3 PCDHA7 PCDHA6 PCDHA4 PCDHA1
esv2730839	Chr.5:140842540 - 140859393 on Build GRCh38	Deletion	PCDHA2 PCDHA8 PCDHA10 PCDHA5 PCDHA9 PCDHA3 PCDHA7 PCDHA6 PCDHA4 PCDHA1
nsv1135376	Chr.5:140849315 - 140859915 on Build GRCh38	Deletion	PCDHA2 PCDHA8 PCDHA10 PCDHA5 PCDHA9 PCDHA3 PCDHA7 PCDHA6 PCDHA4 PCDHA1
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHA2 PCDHGA9 PCDHGA3 PCDHB8 PCDHA8 PCDHGA10 PCDHGB2 PCDHB2 PCDHA3 PCDHGB8P PCDHB15 PCDHA4 PCDHGA12 PCDHAC2 PCDHB10 PCDHB4 TAF7 PCDHGA1 PCDHB12 PCDHA10 PCDHGB6 PCDHA12 PCDHB11 PCDHB7 PCDHB5 PCDHB1 PCDHGA8 PCDHA7 PCDHB13 PCDHGB3 PCDHB3 PCDHA11 PCDHB9 PCDHA6 PCDHA1 PCDHGA6 PCDHGA7 PCDHGB4 PCDHB16 PCDHA9 LOC101926905 PCDHGB7 PCDHGB5 PCDHB18P PCDHGA4 PCDHGA5 PCDHAC1 PCDHA13 PCDHA5 PCDHB6 PCDHB17P SLC25A2 PCDHGA11 PCDHB14 PCDHGA2 PCDHGB1 PCDHB19P
nsv830508	Chr.5:140675388 - 140869073 on Build GRCh38	Loss	PCDHA2 VTRNA1-3 PCDHA11 PCDHA8 HARS PCDHA5 PCDHA3 PCDHA6 PCDHA1 VTRNA1-2 HARS2 PCDHA10 PCDHA9 ZMAT2 PCDHA7 PCDHA4 VTRNA1-1
dgv138e203	Chr.5:140838209 - 140874533 on Build GRCh38	Loss	PCDHA2 PCDHA11 PCDHA8 PCDHA10 PCDHA5 PCDHA9 PCDHA3 PCDHA7 PCDHA6 PCDHA4 PCDHA1
dgv1653e212	Chr.5:140839141 - 140874132 on Build GRCh38	Loss	PCDHA2 PCDHA11 PCDHA8 PCDHA10 PCDHA5 PCDHA9 PCDHA3 PCDHA7 PCDHA6 PCDHA4 PCDHA1
dgv10094n54	Chr.5:140846323 - 140860465 on Build GRCh38	Loss	PCDHA2 PCDHA8 PCDHA10 PCDHA5 PCDHA9 PCDHA3 PCDHA7 PCDHA6 PCDHA4 PCDHA1
nsv823263	Chr.5:140857638 - 140858368 on Build GRCh38	Gain	PCDHA2 PCDHA8 PCDHA10 PCDHA5 PCDHA9 PCDHA3 PCDHA7 PCDHA6 PCDHA4 PCDHA1
dgv10099n54	Chr.5:140850785 - 140859109 on Build GRCh38	Loss	PCDHA2 PCDHA8 PCDHA10 PCDHA5 PCDHA9 PCDHA3 PCDHA7 PCDHA6 PCDHA4 PCDHA1
nsv599894	Chr.5:140852761 - 140864165 on Build GRCh38	Loss	PCDHA2 PCDHA8 PCDHA10 PCDHA5 PCDHA9 PCDHA3 PCDHA7 PCDHA6 PCDHA4 PCDHA1

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
nervous system development

Function(s)

calcium ion binding
protein binding