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See other CASKIN1 CNV Assays ›
Gene Symbol
CASKIN1
Assay Reference Genome
Location

Chr.16:2182007 on build GRCh38
Cytoband
16p13.3
Assay ID Hs02549072_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57524

Gene Name:

 CASK interacting protein 1

Gene Aliases:

 ANKS5A

Location:

 Chr.16:2177183-2196464 on Build GRCh38

Assay Gene Location:

 Within Intron 16
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASKIN1 NM_020764.3 NP_065815.1
AB037727.1 BAA92544.1
AF451977.1 AAL49758.1
BC042011.1 AAH42011.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication RAB40C PDIA2 TRAF7 SNHG19 NPW MPG MRPL28 NME4 CCDC154 RHBDL1 UBE2I AMDHD2 MIR3176 PGP NPRL3 CCDC78 SOX8 RHBDF1 MIR940 DDX11L10 TBL3 LOC729652 MCRIP2 MAPK8IP3 JMJD8 RAB11FIP3 LOC105371038 WDR90 FAHD1 LOC652276 MIR4717 SYNGR3 RPL23AP5 LOC100134368 CAPN15 SNORD60 RPUSD1 MSRB1 SSTR5-AS1 ERVK13-1 MIR6511B1 MIR6859-4 NHLRC4 SSTR5 HS3ST6 NOXO1 LOC105371047 PRR35 FBXL16 NDUFB10 WFIKKN1 CEMP1 MIR1225 LOC105371046 BAIAP3 MEIOB ABCA3 PRSS27 LOC106660606 TPSG1 SNORA64 SNHG9 EME2 IFT140 LINC00254 WASIR2 HBA1 TELO2 FLJ42627 TBC1D24 E4F1 MIR3178 ATP6V0C HAGHL SNORA78 HN1L MIR3180-5 LUC7L ABCA17P LINC00235 SLC9A3R2 CACNA1H NUBP2 FAM173A MRPS34 PTX4 SNORA10 HBQ1 RNPS1 LOC100287175 MIR4516 GNG13 TMEM8A CHTF18 LMF1 PDPK1 C1QTNF8 ECI1 POLR3K HAGH RPL3L TSR3 NARFL NTN3 TMEM204 ZNF598 CCNF RNF151 KCTD5 SPSB3 MLST8 IGFALS SNRNP25 MIR6767 LOC107984876 GFER NME3 LMF1-AS1 MIR6768 AXIN1 CLCN7 RHOT2 BRICD5 MIR662 DECR2 LOC105371049 NTHL1 TSC2 PIGQ UNKL MIR3177 CRAMP1 METTL26 TPSB2 MSLN MIR3677 RAB26 HBM HBA2 WDR24 TPSD1 PKD1 C16orf59 ARHGDIG FAM234A PRR25 DNASE1L2 HBZ STUB1 LOC107987233 GNPTG TPSAB1 C16orf91 MIR5587 LOC105371184 LOC101929280 RPS2 RGS11 CASKIN1 METRN PRSS29P LOC105371045
dgv4859n54 Chr.16:1971892 - 2264400 on Build GRCh38 Loss GFER TRAF7 SNHG19 NPW SLC9A3R2 MIR1225 BRICD5 PGP LOC105371049 TBL3 NTHL1 TSC2 RNPS1 MIR4516 RAB26 PKD1 E4F1 ECI1 DNASE1L2 SYNGR3 SNORD60 MIR3180-5 ZNF598 MIR6511B1 CASKIN1 NOXO1 MLST8
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss TRAF7 SNHG19 PKD1 MIR1225 E4F1 BRICD5 ECI1 DNASE1L2 PGP LOC105371049 SNORD60 TSC2 MIR3180-5 MIR6511B1 MIR4516 CASKIN1 MLST8 RAB26
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss TRAF7 SNHG19 E4F1 BRICD5 ECI1 DNASE1L2 PGP LOC106660606 SNORD60 MIR940 RNPS1 CASKIN1 MLST8 MIR3677 RAB26
nsv571190 Chr.16:2055054 - 2200730 on Build GRCh38 Loss LOC105371049 SNORD60 TSC2 TRAF7 MIR3180-5 SNHG19 PKD1 MIR1225 MIR6511B1 MIR4516 CASKIN1 RAB26
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain MIR6767 CEMP1 TRAF7 SNHG19 MIR6768 MIR1225 BRICD5 ABCA3 AMDHD2 PGP LOC106660606 LOC105371049 MIR940 TSC2 RNPS1 LOC729652 MIR4516 MIR3677 RAB26 PDPK1 TBC1D24 PKD1 C16orf59 E4F1 LOC652276 MIR3178 ECI1 DNASE1L2 MIR4717 ATP6V0C SNORD60 NTN3 MIR3180-5 MIR6511B1 CCNF CASKIN1 MLST8 ABCA17P
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss MIR940 RNPS1 TRAF7 E4F1 BRICD5 CASKIN1 ECI1 DNASE1L2 PGP MLST8 LOC106660606 MIR3677
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion TRAF7 SNHG19 E4F1 BRICD5 ABCA3 ECI1 DNASE1L2 PGP MIR4717 LOC106660606 SNORD60 MIR940 RNPS1 CASKIN1 MLST8 MIR3677 RAB26

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s) Process(es)


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