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See other CASKIN1 CNV Assays ›
Gene Symbol
CASKIN1
Assay Reference Genome
Location

Chr.16:2182007 on build GRCh38
Cytoband
16p13.3
Assay ID Hs02549072_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57524

Gene Name:

 CASK interacting protein 1

Gene Aliases:

 ANKS5A

Location:

 Chr.16:2177183-2196464 on Build GRCh38

Assay Gene Location:

 Within Intron 16
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASKIN1 NM_020764.3 NP_065815.1
AB037727.1 BAA92544.1
AF451977.1 AAL49758.1
BC042011.1 AAH42011.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication FBXL16 RHBDL1 NME4 MAPK8IP3 PKD1 LUC7L RAB26 MRPL28 RGS11 AXIN1 UNKL NUBP2 HAGHL HAGH NOXO1 SSTR5 TPSAB1 MIR6767 PRR35 MEIOB JMJD8 LOC105371047 PRSS27 PRSS29P ABCA3 CACNA1H SSTR5-AS1 DNASE1L2 MIR3177 FLJ42627 GNG13 GNPTG HS3ST6 PIGQ TPSB2 PDIA2 TPSG1 HBA2 LOC100134368 PGP MSRB1 C16orf91 WASIR2 MIR662 LINC00254 ZNF598 CASKIN1 LOC101929280 MIR3180-5 LOC100287175 RPL3L MIR3677 DDX11L10 KCTD5 TBL3 ECI1 LMF1 GFER TMEM8A NPW SNORA64 PDPK1 TBC1D24 DECR2 HN1L RAB40C METTL26 CAPN15 RNF151 BRICD5 ARHGDIG CRAMP1 MIR6768 MCRIP2 CCNF RHOT2 BAIAP3 PTX4 IFT140 MIR4516 NME3 CLCN7 NPRL3 ERVK13-1 MIR1225 POLR3K HBA1 LOC107984876 FAM173A CCDC154 SPSB3 RNPS1 RAB11FIP3 NTHL1 MIR4717 RPUSD1 MIR3176 FAHD1 METRN NDUFB10 SNHG9 TRAF7 MLST8 TELO2 WDR90 LOC105371038 UBE2I RPS2 SOX8 LINC00235 MSLN CEMP1 HBM MPG RPL23AP5 MIR6859-4 MIR6511B1 FAM234A LOC729652 CCDC78 IGFALS TPSD1 NTN3 LOC105371049 LMF1-AS1 PRR25 TSR3 MRPS34 SYNGR3 C1QTNF8 WFIKKN1 SNORD60 SLC9A3R2 HBZ HBQ1 SNHG19 SNORA10 NHLRC4 ATP6V0C MIR3178 TSC2 LOC652276 EME2 TMEM204 LOC105371045 AMDHD2 ABCA17P CHTF18 LOC106660606 MIR940 NARFL E4F1 SNORA78 SNRNP25 STUB1 LOC105371046 LOC107987233 LOC105371184 C16orf59 MIR5587 WDR24 RHBDF1
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss LOC105371049 ZNF598 CASKIN1 MIR1225 PKD1 MIR3180-5 RAB26 MIR3677 TBL3 SYNGR3 RNPS1 ECI1 GFER NTHL1 MIR4717 NPW SNORD60 SLC9A3R2 SNHG19 NOXO1 TSC2 TRAF7 MLST8 LOC106660606 MIR940 BRICD5 ABCA3 E4F1 DNASE1L2 MIR6511B1 MIR4516 PGP
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss LOC105371049 CASKIN1 MIR1225 BRICD5 PKD1 MIR3180-5 RAB26 E4F1 DNASE1L2 ECI1 SNORD60 SNHG19 MIR6511B1 TSC2 MIR4516 TRAF7 MLST8 PGP
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss CASKIN1 LOC106660606 MIR940 BRICD5 RAB26 MIR3677 RNPS1 E4F1 DNASE1L2 ECI1 SNORD60 SNHG19 TRAF7 MLST8 PGP
nsv457349 Chr.16:2055054 - 2200730 on Build GRCh38 Loss LOC105371049 CASKIN1 SNORD60 SNHG19 MIR1225 PKD1 MIR6511B1 TSC2 MIR4516 MIR3180-5 TRAF7 RAB26
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss CASKIN1 LOC106660606 MIR940 BRICD5 TRAF7 MLST8 PGP MIR3677 RNPS1 E4F1 DNASE1L2 ECI1
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain NTN3 LOC105371049 CASKIN1 MIR1225 PKD1 MIR3180-5 RAB26 MIR3677 RNPS1 ECI1 MIR4717 SNORD60 SNHG19 ATP6V0C PDPK1 MIR3178 TBC1D24 TSC2 TRAF7 MLST8 LOC652276 MIR6767 AMDHD2 ABCA17P LOC106660606 MIR940 BRICD5 MIR6768 ABCA3 CCNF E4F1 DNASE1L2 CEMP1 MIR6511B1 MIR4516 LOC729652 C16orf59 PGP
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion CASKIN1 LOC106660606 MIR940 BRICD5 ABCA3 RAB26 MIR3677 RNPS1 E4F1 DNASE1L2 ECI1 MIR4717 SNORD60 SNHG19 TRAF7 MLST8 PGP

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s) Process(es)


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