Hs02550362_cn

• Gene Symbol: PCDHA1
• Assay Reference Genome Location: Chr.5:140851680 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56147
• Gene Name: protocadherin alpha 1
• Gene Aliases: PCDH-ALPHA1
• Location: Chr.5:140786136-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA1	NM_018900.3			NP_061723.1
	NM_031411.2			NP_113599.1
	AF152305.1			AAD43699.1
	AF169695.1			AAF89692.1

Target Gene Details

• Entrez Gene ID: 56146
• Gene Name: protocadherin alpha 2
• Gene Aliases: PCDH-ALPHA2
• Location: Chr.5:140794859-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA2	NM_018905.2			NP_061728.1
	AF152310.1			AAD43704.1

Target Gene Details

• Entrez Gene ID: 56145
• Gene Name: protocadherin alpha 3
• Gene Aliases: PCDH-ALPHA3
• Location: Chr.5:140801198-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA3	NM_018906.2			NP_061729.1
	AF152311.1			AAD43705.1

Target Gene Details

• Entrez Gene ID: 56144
• Gene Name: protocadherin alpha 4
• Gene Aliases: CNR1, CNRN1, CRNR1, PCDH-ALPHA4
• Location: Chr.5:140807074-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA4	NM_018907.3			NP_061730.1
	AB208925.1			BAD92162.1
	AF152312.1			AAD43706.1

Target Gene Details

• Entrez Gene ID: 56143
• Gene Name: protocadherin alpha 5
• Gene Aliases: CNR6, CNRN6, CNRS6, CRNR6, PCDH-ALPHA5
• Location: Chr.5:140821776-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA5	NM_018908.2			NP_061731.1
	AB208863.1			BAD92100.1
	AF152313.1			AAD43707.1
	BC033735.1			AAH33735.1

Target Gene Details

• Entrez Gene ID: 56142
• Gene Name: protocadherin alpha 6
• Gene Aliases: CNR2, CNRN2, CNRS2, CRNR2, PCDH-ALPHA6
• Location: Chr.5:140827922-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA6	NM_018909.3			NP_061732.1
	NM_031849.2			NP_114037.1
	AB209205.1			BAD92442.1
	AF152314.1			AAD43708.1
	AF169694.1			AAF89691.1
	BC036674.2			AAH36674.1

Target Gene Details

• Entrez Gene ID: 56141
• Gene Name: protocadherin alpha 7
• Gene Aliases: CNR4, CNRN4, CNRS4, CRNR4, PCDH-ALPHA7
• Location: Chr.5:140834384-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA7	NM_018910.2			NP_061733.1
	AF152315.1			AAD43709.1

Target Gene Details

• Entrez Gene ID: 56140
• Gene Name: protocadherin alpha 8
• Gene Aliases: PCDH-ALPHA8
• Location: Chr.5:140841322-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA8	NM_018911.2			NP_061734.1
	AF152316.1			AAD43710.1

Target Gene Details

• Entrez Gene ID: 9752
• Gene Name: protocadherin alpha 9
• Gene Aliases: PCDH-ALPHA9
• Location: Chr.5:140847772-141012344 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA9	NM_014005.4	1	3909	NP_054724.1
	NM_031857.1			NP_114063.1
	AB002343.1	1	3909
	AF152317.1			AAD43711.1
	AJ007610.1			CAC22257.1
	AK314303.1
	BC104802.1			AAI04803.1
	BC104804.1			AAI04805.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv819207	Chr.5:140842721 - 140859461 on Build GRCh38	Gain	PCDHA10 PCDHA2 PCDHA8 PCDHA7 PCDHA1 PCDHA3 PCDHA4 PCDHA9 PCDHA6 PCDHA5
esv33939	Chr.5:140837491 - 140859238 on Build GRCh38	Gain+Loss	PCDHA10 PCDHA2 PCDHA8 PCDHA7 PCDHA1 PCDHA3 PCDHA4 PCDHA9 PCDHA6 PCDHA5
dgv1651e212	Chr.5:140838196 - 140852242 on Build GRCh38	Loss	PCDHA2 PCDHA8 PCDHA7 PCDHA1 PCDHA3 PCDHA4 PCDHA9 PCDHA6 PCDHA5
nsv10753	Chr.5:140842575 - 140859579 on Build GRCh38	Gain	PCDHA10 PCDHA2 PCDHA8 PCDHA7 PCDHA1 PCDHA3 PCDHA4 PCDHA9 PCDHA6 PCDHA5
nsv599870	Chr.5:140851652 - 140853802 on Build GRCh38	Loss	PCDHA2 PCDHA8 PCDHA7 PCDHA1 PCDHA3 PCDHA4 PCDHA9 PCDHA6 PCDHA5
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHA10 PCDHB13 PCDHA13 PCDHAC1 PCDHGB7 PCDHB17P PCDHB1 PCDHGA5 PCDHA6 PCDHA5 PCDHAC2 PCDHA7 PCDHB16 PCDHB5 PCDHB2 PCDHGA8 PCDHB4 PCDHGB1 PCDHB6 SLC25A2 PCDHGA3 PCDHA3 PCDHGB4 PCDHB3 PCDHB11 PCDHB14 PCDHA11 PCDHGA12 PCDHB18P PCDHB8 PCDHGB5 PCDHA4 PCDHB19P PCDHGA2 PCDHGB8P PCDHGA4 PCDHGB2 PCDHB9 PCDHA8 TAF7 PCDHB12 PCDHGA9 PCDHGA6 PCDHGA7 LOC101926905 PCDHA12 PCDHA2 PCDHGA10 PCDHGA11 PCDHGB6 PCDHB7 PCDHGB3 PCDHB15 PCDHA1 PCDHB10 PCDHA9 PCDHGA1
dgv138e203	Chr.5:140838209 - 140874533 on Build GRCh38	Loss	PCDHA10 PCDHA2 PCDHA11 PCDHA8 PCDHA7 PCDHA1 PCDHA3 PCDHA4 PCDHA9 PCDHA6 PCDHA5
dgv1653e212	Chr.5:140839141 - 140874132 on Build GRCh38	Loss	PCDHA10 PCDHA2 PCDHA11 PCDHA8 PCDHA7 PCDHA1 PCDHA3 PCDHA4 PCDHA9 PCDHA6 PCDHA5
nsv515909	Chr.5:140848414 - 140852761 on Build GRCh38	Loss	PCDHA2 PCDHA8 PCDHA7 PCDHA1 PCDHA3 PCDHA4 PCDHA9 PCDHA6 PCDHA5
esv3606958	Chr.5:140842689 - 140859762 on Build GRCh38	Loss	PCDHA10 PCDHA2 PCDHA8 PCDHA7 PCDHA1 PCDHA3 PCDHA4 PCDHA9 PCDHA6 PCDHA5
nsv442962	Chr.5:140844251 - 140864171 on Build GRCh38	Loss	PCDHA10 PCDHA2 PCDHA8 PCDHA7 PCDHA1 PCDHA3 PCDHA4 PCDHA9 PCDHA6 PCDHA5
esv3566721	Chr.5:140840563 - 140861415 on Build GRCh38	Deletion	PCDHA10 PCDHA2 PCDHA8 PCDHA7 PCDHA1 PCDHA3 PCDHA4 PCDHA9 PCDHA6 PCDHA5
nsv514324	Chr.5:140844231 - 140859031 on Build GRCh38	Loss	PCDHA10 PCDHA2 PCDHA8 PCDHA7 PCDHA1 PCDHA3 PCDHA4 PCDHA9 PCDHA6 PCDHA5
dgv971n67	Chr.5:140842564 - 140859431 on Build GRCh38	Loss	PCDHA10 PCDHA2 PCDHA8 PCDHA7 PCDHA1 PCDHA3 PCDHA4 PCDHA9 PCDHA6 PCDHA5
dgv724n27	Chr.5:140847633 - 140852761 on Build GRCh38	Loss	PCDHA2 PCDHA8 PCDHA7 PCDHA1 PCDHA3 PCDHA4 PCDHA9 PCDHA6 PCDHA5
nsv1024237	Chr.5:140810775 - 140852242 on Build GRCh38	Loss	PCDHA2 PCDHA8 PCDHA7 PCDHA1 PCDHA3 PCDHA4 PCDHA9 PCDHA6 PCDHA5
dgv1043e199	Chr.5:140842260 - 140861207 on Build GRCh38	Deletion	PCDHA10 PCDHA2 PCDHA8 PCDHA7 PCDHA1 PCDHA3 PCDHA4 PCDHA9 PCDHA6 PCDHA5
dgv3182n106	Chr.5:140842552 - 140859353 on Build GRCh38	Deletion	PCDHA10 PCDHA2 PCDHA8 PCDHA7 PCDHA1 PCDHA3 PCDHA4 PCDHA9 PCDHA6 PCDHA5
esv2730839	Chr.5:140842540 - 140859393 on Build GRCh38	Deletion	PCDHA10 PCDHA2 PCDHA8 PCDHA7 PCDHA1 PCDHA3 PCDHA4 PCDHA9 PCDHA6 PCDHA5
nsv1135376	Chr.5:140849315 - 140859915 on Build GRCh38	Deletion	PCDHA10 PCDHA2 PCDHA8 PCDHA7 PCDHA1 PCDHA3 PCDHA4 PCDHA9 PCDHA6 PCDHA5
esv2657537	Chr.5:140850410 - 140855957 on Build GRCh38	Deletion	PCDHA10 PCDHA2 PCDHA8 PCDHA7 PCDHA1 PCDHA3 PCDHA4 PCDHA9 PCDHA6 PCDHA5
nsv830508	Chr.5:140675388 - 140869073 on Build GRCh38	Loss	PCDHA10 PCDHA2 PCDHA8 ZMAT2 HARS PCDHA3 VTRNA1-1 PCDHA6 PCDHA5 PCDHA11 HARS2 PCDHA7 VTRNA1-3 VTRNA1-2 PCDHA1 PCDHA4 PCDHA9
nsv599841	Chr.5:140841349 - 140856513 on Build GRCh38	Loss	PCDHA10 PCDHA2 PCDHA8 PCDHA7 PCDHA1 PCDHA3 PCDHA4 PCDHA9 PCDHA6 PCDHA5
nsv599859	Chr.5:140849850 - 140852165 on Build GRCh38	Loss	PCDHA2 PCDHA8 PCDHA7 PCDHA1 PCDHA3 PCDHA4 PCDHA9 PCDHA6 PCDHA5
dgv10094n54	Chr.5:140846323 - 140860465 on Build GRCh38	Loss	PCDHA10 PCDHA2 PCDHA8 PCDHA7 PCDHA1 PCDHA3 PCDHA4 PCDHA9 PCDHA6 PCDHA5
esv29977	Chr.5:140843471 - 140856955 on Build GRCh38	Gain	PCDHA10 PCDHA2 PCDHA8 PCDHA7 PCDHA1 PCDHA3 PCDHA4 PCDHA9 PCDHA6 PCDHA5
dgv10099n54	Chr.5:140850785 - 140859109 on Build GRCh38	Loss	PCDHA10 PCDHA2 PCDHA8 PCDHA7 PCDHA1 PCDHA3 PCDHA4 PCDHA9 PCDHA6 PCDHA5

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
nervous system development

Function(s)

calcium ion binding
protein binding