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See other DXO CNV Assays ›
Gene Symbol
DXO
Assay Reference Genome
Location

Chr.6:31970743 on build GRCh38
Cytoband
6p21.33
Assay ID Hs02552631_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 1797

Gene Name:

 decapping exoribonuclease

Gene Aliases:

 DOM3L, DOM3Z, NG6, RAI1

Location:

 Chr.6:31969811-31972290 on Build GRCh38

Assay Gene Location:

 Within Exon 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
DXO NM_005510.3 4 1008 NP_005501.2
XM_006715005.3 4 1087 XP_006715068.1
XM_017010329.1 4 791 XP_016865818.1
AF059252.1 4 804 AAC78603.1
AK310107.1 2 1173
BC009344.2 4 848 AAH09344.1
BC019083.2 4 1020 AAH19083.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv601970 Chr.6:31970674 - 31980252 on Build GRCh38 Loss DXO STK19
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss NOTCH4 AGPAT1 HLA-DQB1-AS1 SLC44A4 MIR1236 SNORD48 TNXA CYP21A2 PPT2-EGFL8 FKBPL PBX2 NELFE HLA-DRB5 AGER STK19 ZBTB12 HCG23 PPT2 SKIV2L HLA-DRB1 HLA-DQB1 TNXB HLA-DRB6 C4B HLA-DQA1 HSPA1B C6orf10 C6orf48 C2-AS1 CFB C2 NEU1 SNORD52 EGFL8 CYP21A1P BTNL2 GPSM3 C4A MIR6721 DXO ATF6B LOC100507547 EHMT2 LOC101929163 MIR6833 HSPA1A RNF5 PRRT1 HLA-DRA
nsv428141 Chr.6:31903735 - 32125066 on Build GRCh38 Gain+Loss DXO STK19 ATF6B C2-AS1 MIR1236 CFB C2 SKIV2L TNXA CYP21A2 CYP21A1P TNXB C4B NELFE C4A
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion NOTCH4 AGPAT1 LY6G6D MIR6832 SLC44A4 MIR1236 SNORD48 TNXA CYP21A2 PPT2-EGFL8 FKBPL HCG26 PBX2 NELFE HLA-DRB5 AGER AIF1 NFKBIL1 STK19 DDX39B-AS1 LST1 ZBTB12 BAG6 C6orf25 DDAH2 HSPA1L ABHD16A TNF HCG23 PPT2 SKIV2L HLA-DRB1 LY6G5B LY6G6C TNXB HLA-DRB6 NCR3 ATP6V1G2-DDX39B CLIC1 C4B GPANK1 HSPA1B LOC102725068 C6orf10 C6orf48 SAPCD1-AS1 C2-AS1 MIR4646 CFB C2 NEU1 SNORD117 LTA SNORD52 EGFL8 HCP5 LY6G6F VWA7 CYP21A1P DDX39B PRRC2A BTNL2 SAPCD1 MICB GPSM3 C4A LTB MIR6721 DXO C6orf47 ATF6B LOC100507547 VARS ATP6V1G2 MSH5-SAPCD1 LY6G5C CSNK2B EHMT2 LSM2 LOC101929163 MIR6833 HSPA1A LY6G6E RNF5 APOM SNORA38 MSH5 PRRT1 LOC100287329 MCCD1 HLA-DRA SNORD84
dgv10403n54 Chr.6:31312324 - 32049763 on Build GRCh38 Loss LY6G6D MIR6832 SLC44A4 MIR1236 SNORD48 TNXA CYP21A2 HCG26 NELFE AIF1 NFKBIL1 STK19 DDX39B-AS1 LST1 ZBTB12 BAG6 C6orf25 DDAH2 HSPA1L ABHD16A TNF SKIV2L MICA LY6G5B LY6G6C TNXB NCR3 ATP6V1G2-DDX39B CLIC1 C4B GPANK1 HSPA1B LOC102725068 C6orf48 SAPCD1-AS1 C2-AS1 MIR4646 HLA-B CFB C2 NEU1 SNORD117 LTA SNORD52 HCP5 LY6G6F VWA7 CYP21A1P DDX39B PRRC2A SAPCD1 MICB C4A LTB DXO C6orf47 MIR6891 VARS ATP6V1G2 MSH5-SAPCD1 LY6G5C CSNK2B EHMT2 LSM2 HSPA1A LY6G6E APOM SNORA38 MSH5 LOC100287329 MCCD1 SNORD84
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion NOTCH4 HLA-DQB1-AS1 PPP1R2P1 TNXA CYP21A2 MIR5004 CUTA MIR6834 NELFE DDX39B-AS1 ZBTB12 HLA-DQB2 PSMB8-AS1 DDAH2 HSPA1L SKIV2L VPS52 RGL2 HLA-DMA HLA-DPA1 HLA-DQB1 HSD17B8 LY6G6C HLA-DRB6 NCR3 C4B HSPA1B SAPCD1-AS1 C2-AS1 MIR3135B NEU1 SNORD117 TAP1 HCG24 LTA TAPBP SNORD52 EGFL8 HCP5 DDX39B HLA-DPB2 BTNL2 MIR6721 C6orf47 ATF6B BRD2 HLA-DPB1 VARS MSH5-SAPCD1 CSNK2B EHMT2 LOC101929163 MIR6833 HSPA1A RNF5 SNORA38 LOC100287329 B3GALT4 RPS18 HLA-DRA ZBTB22 AGPAT1 LY6G6D MIR6832 SLC44A4 MIR1236 MIR219A1 HLA-DQA2 SNORD48 PSMB9 PPT2-EGFL8 SLC39A7 FKBPL HCG26 PBX2 COL11A2 HLA-DRB5 WDR46 AGER AIF1 NFKBIL1 STK19 LST1 RXRB BAG6 C6orf25 RING1 ABHD16A TNF HCG23 PPT2 SYNGAP1 TAP2 HLA-DRB1 LY6G5B TNXB ATP6V1G2-DDX39B CLIC1 HLA-DQA1 GPANK1 ZBTB9 LOC102725068 C6orf10 C6orf48 MIR4646 CFB C2 MIR6873 HLA-DMB LY6G6F VWA7 CYP21A1P PRRC2A LOC100294145 SAPCD1 MICB PHF1 GPSM3 C4A LTB DXO DAXX LOC100507547 KIFC1 ATP6V1G2 PSMB8 HLA-DOB LY6G5C LSM2 HLA-DOA LY6G6E PFDN6 APOM MSH5 PRRT1 MCCD1 HCG25 SNORD84
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion NOTCH4 HLA-DQB1-AS1 PPP1R2P1 TNXA CYP21A2 MIR5004 CUTA MIR6834 NELFE DDX39B-AS1 ZBTB12 HLA-DQB2 PSMB8-AS1 DDAH2 HSPA1L SKIV2L VPS52 RGL2 HLA-DMA HLA-DPA1 HLA-DQB1 HSD17B8 LY6G6C HLA-DRB6 NCR3 C4B HSPA1B SAPCD1-AS1 C2-AS1 MIR3135B NEU1 SNORD117 TAP1 HCG24 LTA TAPBP SNORD52 EGFL8 HCP5 DDX39B HLA-DPB2 BTNL2 MIR6721 C6orf47 ATF6B BRD2 HLA-DPB1 VARS MSH5-SAPCD1 CSNK2B EHMT2 LOC101929163 MIR6833 HSPA1A RNF5 SNORA38 LOC100287329 B3GALT4 RPS18 HLA-DRA ZBTB22 AGPAT1 LY6G6D MIR6832 SLC44A4 MIR1236 MIR219A1 HLA-DQA2 SNORD48 PSMB9 PPT2-EGFL8 SLC39A7 FKBPL HCG26 PBX2 COL11A2 HLA-DRB5 WDR46 AGER AIF1 NFKBIL1 STK19 LST1 RXRB BAG6 C6orf25 RING1 ABHD16A TNF HCG23 PPT2 SYNGAP1 TAP2 HLA-DRB1 LY6G5B TNXB ATP6V1G2-DDX39B CLIC1 HLA-DQA1 GPANK1 ZBTB9 LOC102725068 C6orf10 C6orf48 MIR4646 CFB C2 MIR6873 HLA-DMB LY6G6F VWA7 CYP21A1P PRRC2A LOC100294145 SAPCD1 MICB PHF1 GPSM3 C4A LTB DXO DAXX LOC100507547 KIFC1 ATP6V1G2 PSMB8 HLA-DOB LY6G5C LSM2 HLA-DOA LY6G6E PFDN6 APOM MSH5 PRRT1 MCCD1 HCG25 SNORD84
nsv830628 Chr.6:31919777 - 31979823 on Build GRCh38 Loss DXO STK19 C2-AS1 MIR1236 CFB C2 NELFE SKIV2L
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss NOTCH4 AGPAT1 LY6G6D MIR6832 SLC44A4 MIR1236 SNORD48 TNXA CYP21A2 PPT2-EGFL8 FKBPL HCG26 PBX2 NELFE AGER AIF1 NFKBIL1 STK19 DDX39B-AS1 LST1 ZBTB12 BAG6 C6orf25 DDAH2 HSPA1L ABHD16A TNF HCG23 PPT2 SKIV2L MICA LY6G5B LY6G6C TNXB NCR3 ATP6V1G2-DDX39B CLIC1 C4B GPANK1 HSPA1B LOC102725068 C6orf10 C6orf48 SAPCD1-AS1 C2-AS1 MIR4646 HLA-B CFB C2 NEU1 SNORD117 LTA SNORD52 EGFL8 HCP5 LY6G6F VWA7 CYP21A1P DDX39B PRRC2A BTNL2 SAPCD1 MICB GPSM3 C4A LTB MIR6721 DXO C6orf47 ATF6B LOC100507547 MIR6891 VARS ATP6V1G2 MSH5-SAPCD1 LY6G5C CSNK2B EHMT2 LSM2 LOC101929163 MIR6833 HSPA1A LY6G6E RNF5 APOM SNORA38 MSH5 PRRT1 LOC100287329 MCCD1 HLA-DRA SNORD84
nsv284 Chr.6:31957962 - 32028944 on Build GRCh38 Deletion TNXA DXO STK19 CYP21A1P C4B NELFE SKIV2L C4A

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