Hs02563057_cn

• Gene Symbol: ALDH16A1
• Assay Reference Genome Location: Chr.19:49458935 on build GRCh38
• Cytoband: 19q13.33

Target Gene Details

• Entrez Gene ID: 126133
• Gene Name: aldehyde dehydrogenase 16 family member A1
• Gene Aliases: -
• Location: Chr.19:49453216-49471050 on Build GRCh38
• Assay Gene Location: Overlaps Intron 4 - Exon 5

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
ALDH16A1	NM_001145396.1			NP_001138868.1
	NM_153329.3			NP_699160.2
	XM_011526441.1			XP_011524743.1
	XM_011526442.1			XP_011524744.1
	AK074136.1			BAB84962.1
	AK297101.1
	AK298587.1
	AK301246.1
	BC014895.2			AAH14895.2
	DA629821.1
	DC364604.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv2518	Chr.19:49452273 - 49465137 on Build GRCh38	Insertion	PIH1D1 ALDH16A1
nsv9739	Chr.19:47901840 - 50143063 on Build GRCh38	Gain+Loss	SNRNP70 FTL SNAR-C2 SNORD35B SNAR-C3 MAMSTR CARD8-AS1 AKT1S1 FLT3LG SNAR-A6 RUVBL2 SNAR-A13 NOSIP FGF21 LIG1 CGB8 PTOV1-AS1 RPL18 RCN3 SULT2B1 PRRG2 SNAR-B1 NUCB1-AS1 CGB7 NTN5 BCAT2 RPL13A KCNA7 TEAD2 BAX HSD17B14 TULP2 CD37 SNAR-B2 SNAR-A2 SNAR-A10 CCDC114 CARD8 PIH1D1 FUT1 SNAR-A14 SIGLEC16 TMEM143 NUP62 MIR6798 BCL2L12 NUCB1 IRF3 SNAR-C4 KDELR1 PTOV1 RRAS CYTH2 KCNJ14 LOC100287477 SNAR-A9 FLJ26850 C19orf73 PRMT1 LMTK3 MIR4324 LHB MIR4751 SNAR-A11 ELSPBP1 CA11 CCDC155 FCGRT SCAF1 LOC101059948 PTOV1-AS2 CABP5 VRK3 DKKL1 TRPM4 SNAR-A1 MIR4750 CGB3 SNAR-A3 SNAR-C5 SNAR-A8 LIN7B SNAR-D MIR6800 SIGLEC11 SEC1P LOC101928295 NTF4 ALDH16A1 FUZ SPACA4 ZNF473 PRR12 IL4I1 CGB1 SNAR-G2 GRWD1 SPHK2 SNORD33 PLA2G4C-AS1 IZUMO1 RPS11 PTH2 LOC105372430 PLA2G4C PPFIA3 PLEKHA4 PPP1R15A TSKS ADM5 DBP MIR4749 GFY TBC1D17 SNAR-C1 CPT1C DHDH SNORD32A SNORD34 FAM83E ATF5 LOC105447645 SNAR-A4 SNAR-A5 MIR5088 MED25 SYNGR4 BSPH1 CGB5 MIR6799 SNAR-A7 GYS1 SLC17A7 FUT2 HRC SLC6A16 C19orf68 AP2A1 EMP3 SNAR-A12 RASIP1 CGB2 PNKP GRIN2D MIR150 ZNF114 SNAR-G1 SNORD35A
nsv833862	Chr.19:49448789 - 49570676 on Build GRCh38	Loss	PIH1D1 RCN3 SNORD32A SNORD34 FCGRT SNORD33 ALDH16A1 SNORD35B RPS11 RPL13A MIR150 FLT3LG NOSIP SNORD35A
nsv953599	Chr.19:49386444 - 49506743 on Build GRCh38	Deletion	PIH1D1 LOC101928295 SNORD32A SNORD34 CCDC155 SNORD33 ALDH16A1 SNORD35B RPS11 PTH2 RPL13A MIR150 FLT3LG GFY SNORD35A SLC17A7

More Information

Additional Information:

For this assay, SNP(s) [rs200529298] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

dehydrogenase, oxidoreductase, metabolite interconversion enzyme

Gene Ontology Categories:

Process(es)

oxidation-reduction process

Function(s)

aminobutyraldehyde dehydrogenase activity
4-trimethylammoniobutyraldehyde dehydrogenase activity