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See other PLEKHN1 CNV Assays ›
Gene Symbol
PLEKHN1
Assay Reference Genome
Location

Chr.1:971169 on build GRCh38
Cytoband
1p36.33
Assay ID Hs02602794_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 84069

Gene Name:

 pleckstrin homology domain containing N1

Gene Aliases:

 -

Location:

 Chr.1:965820-975108 on Build GRCh38

Assay Gene Location:

 Within Exon 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PLEKHN1 NM_001160184.1 7 740 NP_001153656.1
NM_032129.2 NP_115505.2
XM_006710944.3 7 1417 XP_006711007.2
XM_011542248.2 6 1537 XP_011540550.2
XM_017002474.1 6 1537 XP_016857963.1
XM_017002475.1 6 1537 XP_016857964.1
XM_017002476.1 6 1537 XP_016857965.1
XM_017002477.1 6 1537 XP_016857966.1
XM_017002478.1 6 1537 XP_016857967.1
XM_017002479.1 6 1537 XP_016857968.1
AL136730.1 CAB66664.1
BC101386.2 7 735 AAI01387.1
BC101387.2 6 855 AAI01388.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2762302 Chr.1:914637 - 1106320 on Build GRCh38 Gain SAMD11 C1orf159 PERM1 LOC105378948 LOC100130417 KLHL17 LOC107985728 ISG15 NOC2L AGRN LOC284600 HES4 LOC100288175 RNF223 PLEKHN1
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC100134822 MTND1P23 LOC100506504 SLC35E2 LOC102724312 TNFRSF4 MIB2 LOC100129534 GABRD PRKCZ FAM41C MIR6726 ATAD3A SAMD11 TMEM240 LOC105378948 UBE2J2 MRPL20 PUSL1 LOC107984841 HES4 WASH7P ATAD3C LINC01342 TAS1R3 TNFRSF18 LOC148413 LOC105378589 MIR6859-2 LOC102725121 LOC105378591 LOC105378592 LOC284600 MORN1 LOC101928626 MIR200A CFAP74 MIR429 AURKAIP1 CDK11B ACAP3 LOC107985728 FAM138A TTLL10 OR4F16 TTLL10-AS1 MIR6808 AGRN CDK11A SDF4 LOC729737 OR4F5 PERM1 MIR6723 MTND2P28 LINC00115 FAAP20 CPTP MIR1302-2 CALML6 LOC105378947 NOC2L MIR6727 LOC100133331 RNF223 LINC01128 VWA1 SCNN1D B3GALT6 LOC100287934 CCNL2 DVL1 TMEM52 ANKRD65 SSU72 GNB1 MIR200B LOC100288069 LOC100132287 C1orf159 SLC35E2B ATAD3B LOC100130417 LOC107985729 OR4F29 SKI TMEM88B FAM132A CPSF3L FNDC10 LOC100288175 MMP23A PLEKHN1 DDX11L1 FAM87B MIR6859-1 KLHL17 LOC105378949 ISG15 NADK MMP23B MXRA8
nsv950451 Chr.1:899421 - 1094520 on Build GRCh38 Deletion SAMD11 C1orf159 PERM1 LOC105378948 LOC100130417 KLHL17 LOC107985728 ISG15 NOC2L AGRN LOC284600 HES4 LOC100288175 RNF223 PLEKHN1
nsv509035 Chr.1:891406 - 985724 on Build GRCh38 Insertion SAMD11 NOC2L PERM1 LOC284600 LOC100130417 KLHL17 PLEKHN1 LOC107985728
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain LINC01342 TNFRSF18 C1orf159 PERM1 LOC100130417 TNFRSF4 NOC2L LOC284600 FAM41C LOC100288175 RNF223 PLEKHN1 MIR200A MIR429 SAMD11 LOC105378948 KLHL17 LOC107985728 TTLL10 ISG15 TTLL10-AS1 AGRN HES4 SDF4 MIR200B
dgv5n100 Chr.1:585989 - 1114424 on Build GRCh38 Gain MTND1P23 C1orf159 PERM1 MIR6723 MTND2P28 LINC00115 LOC100130417 LOC105378947 NOC2L LOC284600 LOC100133331 FAM41C LOC100288175 RNF223 PLEKHN1 LOC101928626 FAM87B LINC01128 SAMD11 LOC105378948 KLHL17 LOC107985728 LOC100287934 OR4F16 ISG15 LOC107984841 AGRN HES4 LOC100288069
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss PERM1 LINC00115 SLC35E2 LOC102724312 CPTP TNFRSF4 MIB2 NOC2L MIR6727 FAM41C MIR6726 RNF223 ATAD3A LINC01128 VWA1 SAMD11 SCNN1D TMEM240 LOC105378948 UBE2J2 B3GALT6 LOC100287934 CCNL2 DVL1 ANKRD65 MRPL20 SSU72 PUSL1 HES4 MIR200B LOC100288069 ATAD3C LINC01342 TAS1R3 TNFRSF18 C1orf159 LOC148413 SLC35E2B ATAD3B LOC100130417 LOC107985729 TMEM88B FAM132A CPSF3L FNDC10 LOC284600 LOC100288175 MMP23A PLEKHN1 FAM87B MIR200A MIR429 AURKAIP1 CDK11B ACAP3 KLHL17 LOC107985728 TTLL10 ISG15 TTLL10-AS1 NADK MIR6808 AGRN CDK11A MMP23B SDF4 MXRA8
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss LINC01342 TNFRSF18 C1orf159 PERM1 LINC00115 LOC100130417 TNFRSF4 FAM132A NOC2L LOC284600 FAM41C LOC100288175 RNF223 PLEKHN1 FAM87B MIR200A MIR429 LINC01128 SAMD11 LOC105378948 UBE2J2 KLHL17 LOC107985728 B3GALT6 TTLL10 ISG15 TTLL10-AS1 AGRN HES4 SDF4 MIR200B
nsv1013524 Chr.1:939510 - 1161955 on Build GRCh38 Gain LINC01342 SAMD11 C1orf159 PERM1 LOC105378948 KLHL17 ISG15 NOC2L AGRN HES4 LOC100288175 RNF223 PLEKHN1
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain LINC01342 TAS1R3 TNFRSF18 C1orf159 LOC148413 PERM1 LOC100130417 CPTP TNFRSF4 TMEM88B FAM132A CPSF3L NOC2L MIR6727 LOC284600 LOC100288175 MIR6726 RNF223 PLEKHN1 MIR200A MIR429 SAMD11 AURKAIP1 SCNN1D LOC105378948 ACAP3 UBE2J2 KLHL17 LOC107985728 B3GALT6 TTLL10 CCNL2 DVL1 ANKRD65 MRPL20 ISG15 TTLL10-AS1 PUSL1 MIR6808 AGRN HES4 SDF4 MXRA8 MIR200B
nsv544895 Chr.1:917392 - 1054900 on Build GRCh38 Loss SAMD11 ISG15 NOC2L PERM1 AGRN LOC284600 HES4 LOC100130417 KLHL17 PLEKHN1 LOC107985728
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion MIR200A MIR429 LINC01342 TNFRSF18 SAMD11 C1orf159 PERM1 LOC105378948 KLHL17 TNFRSF4 TTLL10 ISG15 TTLL10-AS1 NOC2L AGRN HES4 SDF4 LOC100288175 RNF223 MIR200B PLEKHN1
nsv832980 Chr.1:848279 - 1007037 on Build GRCh38 Gain LINC01128 SAMD11 NOC2L PERM1 LOC284600 HES4 FAM41C LOC100130417 KLHL17 PLEKHN1 LOC107985728

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Gene Ontology Categories:

Process(es)


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