Hs02606704_cn

• Gene Symbol: TMEM80
• Assay Reference Genome Location: Chr.11:703560 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 283232
• Gene Name: transmembrane protein 80
• Gene Aliases: -
• Location: Chr.11:695386-705028 on Build GRCh38
• Assay Gene Location: Within Exon 5

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TMEM80	NM_001042463.2	5	1079	NP_001035928.2
	NM_001276253.1			NP_001263182.1
	NM_001276274.1			NP_001263203.1
	NM_174940.3	5	1055	NP_777600.3
	XM_006718206.3			XP_006718269.3
	XM_017017600.1			XP_016873089.1
	AI739035.1
	AK124309.1
	AK302585.1
	BC008671.1	5	1003
	BM874316.1
	CB044312.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	MUC2 TALDO1 CD151 RPLP2 PKP3 CHID1 DEAF1 HRAS MUC6 CDHR5 LOC101927503 LOC101059906 AP2A2 RNH1 MUC5AC PHRF1 TSPAN4 TMEM80 CEND1 PANO1 LRRC56 TOLLIP PDDC1 RASSF7 CRACR2B EPS8L2 B4GALNT4 PIDD1 MIR6744 LOC143666 SCT POLR2L PNPLA2 SIGIRR MIR210HG LMNTD2 MIR210 LOC171391 SNORA52 PTDSS2 SLC25A22 IRF7 MUC5B DRD4 ANO9
nsv522733	Chr.11:702250 - 752059 on Build GRCh38	Loss	TALDO1 EPS8L2 TMEM80
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	MUC2 TALDO1 CD151 RPLP2 CHID1 DEAF1 HRAS MUC6 CDHR5 LOC101927503 TOLLIP-AS1 LOC101059906 AP2A2 RNH1 MUC5AC PHRF1 TSPAN4 TMEM80 CEND1 PANO1 LRRC56 TOLLIP PDDC1 RASSF7 CRACR2B EPS8L2 PIDD1 MIR6744 LOC143666 SCT POLR2L PNPLA2 SIGIRR MIR210HG LMNTD2 MIR210 LOC171391 SNORA52 PTDSS2 SLC25A22 IRF7 MUC5B DRD4 ANO9
nsv832043	Chr.11:631027 - 758602 on Build GRCh38	Loss	TALDO1 EPS8L2 DEAF1 TMEM80 DRD4
nsv552869	Chr.11:702097 - 727446 on Build GRCh38	Loss	EPS8L2 TMEM80
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	TALDO1 CD151 RPLP2 PKP3 CHID1 DEAF1 HRAS CDHR5 LOC101059906 AP2A2 RNH1 PHRF1 TSPAN4 TMEM80 CEND1 PANO1 LRRC56 PDDC1 RASSF7 CRACR2B EPS8L2 B4GALNT4 PIDD1 LOC143666 SCT POLR2L PNPLA2 SIGIRR MIR210HG LMNTD2 MIR210 LOC171391 SNORA52 PTDSS2 SLC25A22 IRF7 DRD4 ANO9
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	TALDO1 CD151 RPLP2 CHID1 DEAF1 HRAS CDHR5 LOC101059906 RNH1 PHRF1 TSPAN4 TMEM80 CEND1 PANO1 LRRC56 PDDC1 RASSF7 CRACR2B EPS8L2 PIDD1 LOC143666 SCT POLR2L PNPLA2 MIR210HG LMNTD2 MIR210 LOC171391 SNORA52 PTDSS2 SLC25A22 IRF7 DRD4

More Information

Additional Information:

For this assay, SNP(s) [rs71469814] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, DGV Variation