Hs02614059_cn

• Gene Symbol: PCDHA1
• Assay Reference Genome Location: Chr.5:140843643 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56147
• Gene Name: protocadherin alpha 1
• Gene Aliases: PCDH-ALPHA1
• Location: Chr.5:140786136-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA1	NM_018900.3			NP_061723.1
	NM_031411.2			NP_113599.1
	AF152305.1			AAD43699.1
	AF169695.1			AAF89692.1

Target Gene Details

• Entrez Gene ID: 56146
• Gene Name: protocadherin alpha 2
• Gene Aliases: PCDH-ALPHA2
• Location: Chr.5:140794859-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA2	NM_018905.2			NP_061728.1
	AF152310.1			AAD43704.1

Target Gene Details

• Entrez Gene ID: 56145
• Gene Name: protocadherin alpha 3
• Gene Aliases: PCDH-ALPHA3
• Location: Chr.5:140801198-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA3	NM_018906.2			NP_061729.1
	AF152311.1			AAD43705.1

Target Gene Details

• Entrez Gene ID: 56144
• Gene Name: protocadherin alpha 4
• Gene Aliases: CNR1, CNRN1, CRNR1, PCDH-ALPHA4
• Location: Chr.5:140807074-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA4	NM_018907.3			NP_061730.1
	AB208925.1			BAD92162.1
	AF152312.1			AAD43706.1

Target Gene Details

• Entrez Gene ID: 56143
• Gene Name: protocadherin alpha 5
• Gene Aliases: CNR6, CNRN6, CNRS6, CRNR6, PCDH-ALPHA5
• Location: Chr.5:140821776-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA5	NM_018908.2			NP_061731.1
	AB208863.1			BAD92100.1
	AF152313.1			AAD43707.1
	BC033735.1			AAH33735.1

Target Gene Details

• Entrez Gene ID: 56142
• Gene Name: protocadherin alpha 6
• Gene Aliases: CNR2, CNRN2, CNRS2, CRNR2, PCDH-ALPHA6
• Location: Chr.5:140827922-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA6	NM_018909.3			NP_061732.1
	NM_031849.2			NP_114037.1
	AB209205.1			BAD92442.1
	AF152314.1			AAD43708.1
	AF169694.1			AAF89691.1
	BC036674.2			AAH36674.1

Target Gene Details

• Entrez Gene ID: 56141
• Gene Name: protocadherin alpha 7
• Gene Aliases: CNR4, CNRN4, CNRS4, CRNR4, PCDH-ALPHA7
• Location: Chr.5:140834384-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA7	NM_018910.2			NP_061733.1
	AF152315.1			AAD43709.1

Target Gene Details

• Entrez Gene ID: 56140
• Gene Name: protocadherin alpha 8
• Gene Aliases: PCDH-ALPHA8
• Location: Chr.5:140841322-141012344 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA8	NM_018911.2	1	2322	NP_061734.1
	NM_031856.1	1	2322	NP_114062.1
	AF152316.1	1	2322	AAD43710.1
	AF152486.1	1	2322	AAD43747.1
	BC136749.1	1	2417
	BC136750.1	1	2417

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv599839	Chr.5:140837299 - 140848579 on Build GRCh38	Gain	PCDHA4 PCDHA3 PCDHA9 PCDHA2 PCDHA5 PCDHA7 PCDHA8 PCDHA1 PCDHA6
nsv819207	Chr.5:140842721 - 140859461 on Build GRCh38	Gain	PCDHA4 PCDHA3 PCDHA9 PCDHA10 PCDHA2 PCDHA5 PCDHA7 PCDHA8 PCDHA1 PCDHA6
esv33939	Chr.5:140837491 - 140859238 on Build GRCh38	Gain+Loss	PCDHA4 PCDHA3 PCDHA9 PCDHA10 PCDHA2 PCDHA5 PCDHA7 PCDHA8 PCDHA1 PCDHA6
dgv1651e212	Chr.5:140838196 - 140852242 on Build GRCh38	Loss	PCDHA4 PCDHA3 PCDHA9 PCDHA2 PCDHA5 PCDHA7 PCDHA8 PCDHA1 PCDHA6
nsv10753	Chr.5:140842575 - 140859579 on Build GRCh38	Gain	PCDHA4 PCDHA3 PCDHA9 PCDHA10 PCDHA2 PCDHA5 PCDHA7 PCDHA8 PCDHA1 PCDHA6
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHB8 PCDHA3 PCDHB2 PCDHGB7 PCDHB19P PCDHGA8 PCDHA8 PCDHAC2 PCDHB9 PCDHB7 PCDHB4 PCDHA11 PCDHGA6 PCDHGA10 PCDHB16 PCDHA13 PCDHA7 PCDHGB2 PCDHGB4 PCDHB6 PCDHB14 PCDHGB5 PCDHA2 PCDHA12 PCDHGB1 PCDHB12 PCDHA5 PCDHA6 PCDHA4 PCDHB17P PCDHGA1 PCDHGB8P PCDHB5 PCDHGA5 PCDHGA3 PCDHGA7 PCDHGB6 PCDHB3 SLC25A2 PCDHAC1 PCDHB11 PCDHA9 PCDHGA2 LOC101926905 PCDHGA9 PCDHA1 PCDHGB3 PCDHGA11 TAF7 PCDHA10 PCDHB13 PCDHB1 PCDHB18P PCDHB15 PCDHB10 PCDHGA12 PCDHGA4
dgv138e203	Chr.5:140838209 - 140874533 on Build GRCh38	Loss	PCDHA4 PCDHA3 PCDHA9 PCDHA11 PCDHA10 PCDHA2 PCDHA5 PCDHA7 PCDHA8 PCDHA1 PCDHA6
dgv1653e212	Chr.5:140839141 - 140874132 on Build GRCh38	Loss	PCDHA4 PCDHA3 PCDHA9 PCDHA11 PCDHA10 PCDHA2 PCDHA5 PCDHA7 PCDHA8 PCDHA1 PCDHA6
dgv970n67	Chr.5:140784829 - 140843644 on Build GRCh38	Gain	PCDHA4 PCDHA3 PCDHA2 PCDHA5 PCDHA7 PCDHA8 PCDHA1 PCDHA6
nsv1133616	Chr.5:140842215 - 140848715 on Build GRCh38	Deletion	PCDHA4 PCDHA3 PCDHA9 PCDHA2 PCDHA5 PCDHA7 PCDHA8 PCDHA1 PCDHA6
nsv436885	Chr.5:140835434 - 140846096 on Build GRCh38	Insertion	PCDHA4 PCDHA3 PCDHA2 PCDHA5 PCDHA7 PCDHA8 PCDHA1 PCDHA6
nsv980734	Chr.5:140841022 - 140843672 on Build GRCh38	Duplication	PCDHA4 PCDHA3 PCDHA2 PCDHA5 PCDHA7 PCDHA8 PCDHA1 PCDHA6
dgv972n67	Chr.5:140843057 - 140843649 on Build GRCh38	Gain	PCDHA4 PCDHA3 PCDHA2 PCDHA5 PCDHA7 PCDHA8 PCDHA1 PCDHA6
esv3606958	Chr.5:140842689 - 140859762 on Build GRCh38	Loss	PCDHA4 PCDHA3 PCDHA9 PCDHA10 PCDHA2 PCDHA5 PCDHA7 PCDHA8 PCDHA1 PCDHA6
esv3566721	Chr.5:140840563 - 140861415 on Build GRCh38	Deletion	PCDHA4 PCDHA3 PCDHA9 PCDHA10 PCDHA2 PCDHA5 PCDHA7 PCDHA8 PCDHA1 PCDHA6
dgv971n67	Chr.5:140842564 - 140859431 on Build GRCh38	Loss	PCDHA4 PCDHA3 PCDHA9 PCDHA10 PCDHA2 PCDHA5 PCDHA7 PCDHA8 PCDHA1 PCDHA6
nsv1024237	Chr.5:140810775 - 140852242 on Build GRCh38	Loss	PCDHA4 PCDHA3 PCDHA9 PCDHA2 PCDHA5 PCDHA7 PCDHA8 PCDHA1 PCDHA6
dgv1043e199	Chr.5:140842260 - 140861207 on Build GRCh38	Deletion	PCDHA4 PCDHA3 PCDHA9 PCDHA10 PCDHA2 PCDHA5 PCDHA7 PCDHA8 PCDHA1 PCDHA6
dgv3182n106	Chr.5:140842552 - 140859353 on Build GRCh38	Deletion	PCDHA4 PCDHA3 PCDHA9 PCDHA10 PCDHA2 PCDHA5 PCDHA7 PCDHA8 PCDHA1 PCDHA6
esv2730839	Chr.5:140842540 - 140859393 on Build GRCh38	Deletion	PCDHA4 PCDHA3 PCDHA9 PCDHA10 PCDHA2 PCDHA5 PCDHA7 PCDHA8 PCDHA1 PCDHA6
nsv830508	Chr.5:140675388 - 140869073 on Build GRCh38	Loss	PCDHA4 PCDHA3 PCDHA10 VTRNA1-3 ZMAT2 VTRNA1-1 PCDHA8 PCDHA9 PCDHA11 PCDHA2 VTRNA1-2 HARS HARS2 PCDHA5 PCDHA7 PCDHA1 PCDHA6
esv2861013	Chr.5:140834461 - 140848573 on Build GRCh38	Duplication	PCDHA4 PCDHA3 PCDHA9 PCDHA2 PCDHA5 PCDHA7 PCDHA8 PCDHA1 PCDHA6
nsv599841	Chr.5:140841349 - 140856513 on Build GRCh38	Loss	PCDHA4 PCDHA3 PCDHA9 PCDHA10 PCDHA2 PCDHA5 PCDHA7 PCDHA8 PCDHA1 PCDHA6
nsv823251	Chr.5:140842018 - 140843644 on Build GRCh38	Gain	PCDHA4 PCDHA3 PCDHA2 PCDHA5 PCDHA7 PCDHA8 PCDHA1 PCDHA6
dgv10092n54	Chr.5:140835344 - 140850785 on Build GRCh38	Loss	PCDHA4 PCDHA3 PCDHA9 PCDHA2 PCDHA5 PCDHA7 PCDHA8 PCDHA1 PCDHA6
esv29977	Chr.5:140843471 - 140856955 on Build GRCh38	Gain	PCDHA4 PCDHA3 PCDHA9 PCDHA10 PCDHA2 PCDHA5 PCDHA7 PCDHA8 PCDHA1 PCDHA6
dgv1044e199	Chr.5:140843360 - 140849907 on Build GRCh38	Deletion	PCDHA4 PCDHA3 PCDHA9 PCDHA2 PCDHA5 PCDHA7 PCDHA8 PCDHA1 PCDHA6

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
nervous system development

Function(s)

calcium ion binding
protein binding