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See other IRF3 CNV Assays ›
Gene Symbol
IRF3
Assay Reference Genome
Location

Chr.19:49662661 on build GRCh38
Cytoband
19q13.33
Assay ID Hs02616014_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 3661

Gene Name:

 interferon regulatory factor 3

Gene Aliases:

 IIAE7

Location:

 Chr.19:49659569-49665875 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 5 - Exon 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
IRF3 NM_001197122.1 NP_001184051.1
NM_001197123.1 NP_001184052.1
NM_001197124.1 NP_001184053.1
NM_001197125.1 NP_001184054.1
NM_001197126.1 NP_001184055.1
NM_001197127.1 NP_001184056.1
NM_001197128.1 NP_001184057.1
NM_001571.5 NP_001562.1
NR_045568.1
XM_006723197.1 XP_006723260.1
XM_006723198.1 XP_006723261.1
XM_006723200.1 XP_006723263.1
XM_006723201.1 XP_006723264.1
XM_006723202.2 XP_006723265.1
XM_017026766.1 XP_016882255.1
XM_017026767.1 XP_016882256.1
AB102884.1 BAD89413.1
AB102887.1 BAD89416.1
AK057577.1
AK292027.1
AK314421.1
BC000660.2 AAH00660.1
BC009395.2 AAH09395.1
BC071721.1 AAH71721.1
BP347627.1
CB961512.1
HM357932.1
HM357933.1
HM357934.1
HM357935.1
HM357936.1
HM357937.1
Z56281.1 CAA91227.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv469715 Chr.19:49572544 - 49730286 on Build GRCh38 Gain+Loss ADM5 NOSIP IRF3 PRMT1 BCL2L12 SCAF1 CPT1C PRR12 RRAS PRRG2 MIR5088
nsv833865 Chr.19:49572545 - 49730286 on Build GRCh38 Gain+Loss ADM5 NOSIP IRF3 PRMT1 BCL2L12 SCAF1 CPT1C PRR12 RRAS PRRG2 MIR5088
nsv9739 Chr.19:47901840 - 50143063 on Build GRCh38 Gain+Loss SNAR-A5 AP2A1 PLEKHA4 LMTK3 RASIP1 MIR4324 ELSPBP1 SNORD34 LIN7B NTN5 KCNJ14 ZNF473 PPP1R15A SLC6A16 PLA2G4C SNAR-A11 CGB5 SULT2B1 BCL2L12 NUCB1-AS1 SNAR-B1 SEC1P TMEM143 FUT1 IL4I1 RPL13A FUT2 CARD8-AS1 PTOV1-AS1 ADM5 PTOV1-AS2 SPACA4 SPHK2 DHDH SNAR-A3 MIR4750 SYNGR4 SNAR-C3 SNAR-C1 CGB7 SNAR-C4 RUVBL2 PRR12 LOC101928295 SNORD33 DBP LOC100287477 CCDC155 FLJ26850 SNAR-C2 SNORD35A SIGLEC11 PRMT1 LOC101059948 SNAR-A13 C19orf68 MIR150 CGB3 MIR4749 PNKP PTH2 SNAR-A4 MED25 KCNA7 NOSIP GFY RRAS SNAR-A1 CGB1 GRWD1 FCGRT VRK3 LIG1 TRPM4 CPT1C PLA2G4C-AS1 NTF4 MIR4751 ATF5 FAM83E SNORD35B FGF21 MAMSTR GYS1 SNAR-A9 SNAR-G1 TBC1D17 SNAR-A8 MIR6798 CGB8 SNAR-G2 SNAR-A6 GRIN2D CD37 SNAR-A2 SNAR-B2 DKKL1 SNAR-A7 IRF3 CGB2 C19orf73 LOC105447645 SNORD32A SIGLEC16 MIR6800 SNAR-A12 EMP3 ALDH16A1 SLC17A7 BAX CABP5 TEAD2 TULP2 PRRG2 LHB BCAT2 SNAR-C5 MIR6799 TSKS HRC NUCB1 RCN3 CARD8 SNAR-D RPL18 FTL AKT1S1 PPFIA3 ZNF114 HSD17B14 PTOV1 SNRNP70 PIH1D1 SNAR-A10 CCDC114 IZUMO1 FUZ FLT3LG KDELR1 LOC105372430 CYTH2 SNAR-A14 SCAF1 RPS11 CA11 BSPH1 MIR5088 NUP62
nsv817854 Chr.19:49618821 - 49726387 on Build GRCh38 Gain ADM5 IRF3 PRMT1 BCL2L12 SCAF1 CPT1C PRR12 RRAS MIR5088
nsv953600 Chr.19:49555044 - 49938043 on Build GRCh38 Deletion MIR4749 ADM5 PNKP AP2A1 MIR6800 PTOV1-AS2 MED25 NOSIP RRAS PRRG2 MIR6799 MIR4750 TSKS CPT1C PRR12 MIR4751 ATF5 AKT1S1 TBC1D17 BCL2L12 PTOV1 FUZ IL4I1 IRF3 PRMT1 PTOV1-AS1 SCAF1 MIR5088 NUP62
nsv833864 Chr.19:49551790 - 49733819 on Build GRCh38 Gain ADM5 NOSIP IRF3 PRMT1 BCL2L12 SCAF1 CPT1C PRR12 RRAS PRRG2 MIR5088
nsv1160655 Chr.19:49489110 - 49841830 on Build GRCh38 Deletion MIR150 SNORD32A ADM5 AP2A1 MIR6800 MED25 NOSIP SNORD34 RRAS PRRG2 FCGRT MIR6799 TSKS RCN3 CPT1C PRR12 SNORD35B BCL2L12 SNORD33 SNORD35A FUZ RPL13A IRF3 PRMT1 PTOV1-AS1 SCAF1 RPS11 MIR5088
nsv828578 Chr.19:49560777 - 49680548 on Build GRCh38 Loss NOSIP IRF3 PRMT1 BCL2L12 SCAF1 PRR12 RRAS PRRG2
nsv579908 Chr.19:49645135 - 49663393 on Build GRCh38 Loss IRF3 SCAF1

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More Information


Additional Information:

For this assay, SNP(s) [rs74980832] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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