Hs02645293_cn

• Gene Symbol: C9orf139
• Assay Reference Genome Location: Chr.9:137032278 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 401563
• Gene Name: chromosome 9 open reading frame 139
• Gene Aliases: -
• Location: Chr.9:137027464-137037770 on Build GRCh38
• Assay Gene Location: Within Exon 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
C9orf139	NM_207511.2	2	729	NP_997394.1
	XM_017014717.1			XP_016870206.1
	AK124899.1	2	729	BAC85986.1

Target Gene Details

• Entrez Gene ID: 2529
• Gene Name: fucosyltransferase 7
• Gene Aliases: FucT-VII
• Location: Chr.9:137030174-137032840 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FUT7	NM_004479.3	1	563	NP_004470.1
	AK313124.1	1	197
	BC086312.1	1	563	AAH86312.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13007n54	Chr.9:136966179 - 137173890 on Build GRCh38	Loss	ENTPD2 C9orf142 MIR3621 ABCA2 PTGDS GRIN1 FUT7 LRRC26 MAN1B1-AS1 CLIC3 PRR31 TMEM210 LOC101930307 SAPCD2 MAN1B1 LCNL1 DPP7 C9orf139 NPDC1 UAP1L1
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	SSNA1 MIR3621 PTGDS EXD3 TPRN LRRC26 CLIC3 TMEM210 MAN1B1 RABL6 C9orf139 UAP1L1 NRARP NELFB CCDC183-AS1 NSMF CYSRT1 C9orf173-AS1 ABCA2 FUT7 TMEM203 MAN1B1-AS1 RNF208 PRR31 LOC101930307 STPG3 EDF1 MIR4479 LCNL1 CCDC183 ENTPD2 NOXA1 LCN12 SLC34A3 GRIN1 FBXW5 ANAPC2 MIR7114 MAMDC4 SAPCD2 DPP7 NPDC1 RNF224 C9orf142 C8G TOR4A TRAF2 FAM166A MIR4292 PNPLA7 PHPT1 C9orf172 NDOR1 TUBB4B ENTPD8
nsv951206	Chr.9:136944849 - 137114548 on Build GRCh38	Deletion	ENTPD2 LCN12 C9orf142 C8G ABCA2 PTGDS FUT7 MAN1B1-AS1 CLIC3 PRR31 LOC101930307 SAPCD2 MAN1B1 LCNL1 DPP7 C9orf139 NPDC1 UAP1L1
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	MIR3621 PTGDS LCN10 LRRC26 LCN8 LINC01451 LOC100128593 CLIC3 TMEM210 MIR6722 PMPCA MAN1B1 RABL6 C9orf139 UAP1L1 CCDC183-AS1 LCN15 ABCA2 FUT7 MAN1B1-AS1 C9orf163 TMEM141 PRR31 AGPAT2 LOC101930307 DNLZ EDF1 MIR4479 SNHG7 LCNL1 CCDC183 ENTPD2 LCN12 GRIN1 MIR4673 FBXW5 INPP5E SEC16A MAMDC4 LCN6 MIR4674 SAPCD2 DPP7 EGFL7 SNORA17A SNORA17B NPDC1 FAM69B C9orf142 C8G TRAF2 NOTCH1 MIR4292 SNAPC4 NALT1 HSPC324 PHPT1 C9orf172 SDCCAG3 CARD9 MIR126
esv2761561	Chr.9:137030185 - 137191593 on Build GRCh38	Gain	ENTPD2 SSNA1 MIR3621 GRIN1 FUT7 LRRC26 MAN1B1-AS1 ANAPC2 TMEM210 LOC101930307 SAPCD2 MAN1B1 DPP7 C9orf139 NPDC1 UAP1L1
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	SSNA1 MIR3621 PTGDS LCN10 EXD3 TPRN LRRC26 LCN8 LINC01451 LOC100128593 CLIC3 TMEM210 MIR6722 MAN1B1 RABL6 C9orf139 UAP1L1 NRARP NELFB CCDC183-AS1 CYSRT1 C9orf173-AS1 LCN15 ABCA2 FUT7 TMEM203 MAN1B1-AS1 RNF208 TMEM141 PRR31 AGPAT2 LOC101930307 STPG3 EDF1 MIR4479 SNHG7 LCNL1 CCDC183 ENTPD2 LCN12 SLC34A3 GRIN1 FBXW5 ANAPC2 MAMDC4 LCN6 SAPCD2 DPP7 EGFL7 SNORA17A SNORA17B NPDC1 FAM69B RNF224 C9orf142 C8G TOR4A TRAF2 FAM166A MIR4292 HSPC324 PHPT1 C9orf172 NDOR1 TUBB4B MIR126
nsv616004	Chr.9:137014976 - 137053021 on Build GRCh38	Loss	ENTPD2 ABCA2 FUT7 C9orf139 NPDC1

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

glycosyltransferase

Gene Ontology Categories:

Process(es)

CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation
leukocyte migration involved in immune response
protein glycosylation
protein N-linked glycosylation
fucosylation
L-fucose catabolic process

Function(s)

fucosyltransferase activity
alpha-(1->3)-fucosyltransferase activity