Hs02701640_cn

• Gene Symbol: ATRIP
• Assay Reference Genome Location: Chr.3:48465678 on build GRCh38
• Cytoband: 3p21.31

Target Gene Details

• Entrez Gene ID: 84126
• Gene Name: ATR interacting protein
• Gene Aliases: -
• Location: Chr.3:48446710-48465655 on Build GRCh38
• Assay Gene Location: Overlaps - Exon 15

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
ATRIP	NM_001271022.1			NP_001257951.1
	NM_001271023.1			NP_001257952.1
	NM_032166.3			NP_115542.2
	NM_130384.2			NP_569055.1
	AF451323.1			AAL38042.1
	AK022405.1			BAB14029.1
	AK300548.1
	AL832917.1			CAH10621.1
	BC014153.2			AAH14153.2
	BC030597.2			AAH30597.1

Target Gene Details

• Entrez Gene ID: 11277
• Gene Name: three prime repair exonuclease 1
• Gene Aliases: AGS1, CRV, DRN3, HERNS
• Location: Chr.3:48465520-48467645 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TREX1	NM_007248.3	1	159	NP_009179.2
	NM_016381.5	1	159	NP_057465.1
	NM_033629.4	1	159	NP_338599.1
	AL137745.1	1	159

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv834684	Chr.3:48344209 - 48551890 on Build GRCh38	Gain	PLXNB1 FBXW12 TREX1 TMA7 ATRIP PFKFB4 CCDC51 MIR6823 SHISA5
dgv8315n54	Chr.3:48464432 - 48478412 on Build GRCh38	Loss	TREX1 ATRIP SHISA5
nsv590242	Chr.3:48392157 - 48518906 on Build GRCh38	Loss	PLXNB1 FBXW12 TREX1 TMA7 ATRIP PFKFB4 CCDC51 SHISA5
nsv508917	Chr.3:48400224 - 48499357 on Build GRCh38	Insertion	PLXNB1 TREX1 TMA7 ATRIP CCDC51 SHISA5

More Information

• Set Membership: Intragenic, Exonic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

DNA damage checkpoint
DNA replication
interstrand cross-link repair
regulation of signal transduction by p53 class mediator

Function(s)

protein binding
K63-linked polyubiquitin binding