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See other CASKIN1 CNV Assays ›
Gene Symbol
CASKIN1
Assay Reference Genome
Location

Chr.16:2183663 on build GRCh38
Cytoband
16p13.3
Assay ID Hs02705835_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57524

Gene Name:

 CASK interacting protein 1

Gene Aliases:

 ANKS5A

Location:

 Chr.16:2177183-2196464 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 16 - Exon 16
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASKIN1 NM_020764.3 NP_065815.1
AB037727.1 BAA92544.1
AF451977.1 AAL49758.1
BC042011.1 AAH42011.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication MIR1225 PRR35 CAPN15 MIR6768 LOC105371184 TBL3 MPG DECR2 FAM173A SOX8 HBQ1 PTX4 LMF1-AS1 ECI1 CACNA1H TMEM8A RPUSD1 CASKIN1 LINC00254 LINC00235 ARHGDIG LOC105371045 HBA2 MIR5587 LMF1 SLC9A3R2 MIR3677 NPW CCNF EME2 LOC105371047 SNHG19 PRSS27 ZNF598 TPSB2 SSTR5-AS1 MCRIP2 MIR6859-4 NPRL3 SSTR5 LOC105371038 ABCA3 SPSB3 MIR3176 MIR662 NARFL SNORD60 HBM METTL26 C1QTNF8 AXIN1 E4F1 RHBDL1 KCTD5 NOXO1 MRPS34 HAGHL MIR940 MRPL28 GFER WDR90 PKD1 CEMP1 SNORA10 MIR3177 TPSAB1 CCDC78 C16orf91 LOC100134368 IFT140 MEIOB TPSG1 LOC729652 RPS2 PGP SNORA78 TMEM204 MLST8 PRR25 AMDHD2 FLJ42627 C16orf59 NTHL1 CCDC154 METRN RNF151 LOC107987233 HBZ LOC652276 RAB40C PIGQ TSC2 ERVK13-1 MIR3180-5 CHTF18 RHOT2 NHLRC4 RAB26 SNHG9 NME3 MIR4717 GNG13 SNORA64 RPL3L DDX11L10 UBE2I MIR6511B1 TRAF7 LOC105371046 TBC1D24 MAPK8IP3 GNPTG POLR3K LOC106660606 CLCN7 NTN3 JMJD8 LOC101929280 LUC7L NUBP2 HAGH LOC100287175 MIR4516 PRSS29P HS3ST6 MIR3178 WASIR2 HN1L RHBDF1 LOC107984876 UNKL RAB11FIP3 PDPK1 FBXL16 MSLN MSRB1 HBA1 TSR3 NME4 CRAMP1 WFIKKN1 WDR24 ATP6V0C MIR6767 TELO2 FAHD1 RNPS1 PDIA2 RPL23AP5 LOC105371049 BAIAP3 IGFALS ABCA17P FAM234A TPSD1 SYNGR3 STUB1 SNRNP25 RGS11 BRICD5 NDUFB10 DNASE1L2
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss MIR1225 NTHL1 ABCA3 TBL3 TSC2 MIR3180-5 SNORD60 RAB26 MIR4717 E4F1 NOXO1 ECI1 MIR6511B1 TRAF7 MIR940 GFER CASKIN1 PKD1 RNPS1 LOC106660606 SLC9A3R2 LOC105371049 MIR3677 NPW SYNGR3 MIR4516 SNHG19 PGP ZNF598 MLST8 BRICD5 DNASE1L2
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss MIR1225 CASKIN1 PKD1 LOC105371049 TSC2 MIR3180-5 SNORD60 RAB26 E4F1 MIR4516 SNHG19 PGP ECI1 MIR6511B1 TRAF7 MLST8 BRICD5 DNASE1L2
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss CASKIN1 RNPS1 LOC106660606 MIR3677 SNORD60 RAB26 E4F1 SNHG19 PGP ECI1 TRAF7 MLST8 BRICD5 DNASE1L2 MIR940
nsv457349 Chr.16:2055054 - 2200730 on Build GRCh38 Loss MIR3180-5 SNORD60 MIR1225 RAB26 CASKIN1 PKD1 MIR4516 SNHG19 LOC105371049 MIR6511B1 TRAF7 TSC2
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss CASKIN1 E4F1 RNPS1 LOC106660606 PGP ECI1 TRAF7 MLST8 BRICD5 DNASE1L2 MIR3677 MIR940
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain AMDHD2 PDPK1 MIR1225 C16orf59 ABCA3 MIR6768 LOC652276 TSC2 MIR3180-5 SNORD60 RAB26 MIR4717 E4F1 ECI1 MIR6511B1 TRAF7 MIR940 TBC1D24 ATP6V0C CASKIN1 MIR6767 PKD1 RNPS1 LOC106660606 NTN3 CEMP1 LOC105371049 MIR3677 ABCA17P CCNF LOC729652 MIR4516 SNHG19 PGP MIR3178 MLST8 BRICD5 DNASE1L2
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion CASKIN1 ABCA3 RNPS1 LOC106660606 MIR3677 SNORD60 RAB26 MIR4717 E4F1 SNHG19 PGP ECI1 TRAF7 MLST8 BRICD5 DNASE1L2 MIR940

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s) Process(es)


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