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See other SHMT2 CNV Assays ›
Gene Symbol
SHMT2
Assay Reference Genome
Location

Chr.12:57232456 on build GRCh38
Cytoband
12q13.3
Assay ID Hs02777498_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 6472

Gene Name:

 serine hydroxymethyltransferase 2

Gene Aliases:

 GLYA, HEL-S-51e, SHMT

Location:

 Chr.12:57229573-57234935 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 7 - Exon 8
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SHMT2 NM_001166356.1 NP_001159828.1
NM_001166357.1 NP_001159829.1
NM_001166358.1 NP_001159830.1
NM_001166359.1 NP_001159831.1
NM_005412.5 NP_005403.2
NR_029415.1
NR_029416.1
NR_029417.1
NR_048562.1
XM_011538675.2 XP_011536977.1
XM_011538676.2 XP_011536978.1
XM_011538677.2 XP_011536979.1
XM_011538678.2 XP_011536980.1
AK055053.1 3 1454
AK223555.1 BAD97275.1
AK295941.1
AK296183.1
AK297173.1
AK298231.1
AK301339.1
AK301443.1
AK303827.1
AK315916.1
BC011911.2 AAH11911.1
BC013677.2 AAH13677.1
BC032584.1 AAH32584.1
BC044211.1 AAH44211.1
BC091501.1 AAH91501.1
BT006866.1 AAP35512.1
BX647711.1 CAI46021.1
BX648847.1
CN395976.1
EU668344.1
KU178333.1
KU178334.1
L11932.1 AAA63258.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482992 Chr.12:56206217 - 57706217 on Build GRCh38 Gain+Loss INHBE SLC39A5 SHMT2 MYO1A MBD6 NEMP1 MIP OS9 RDH16 NACA STAT6 ATP5B SLC26A10 CS HSD17B6 ARHGAP9 NAB2 APOF LOC101927583 GLS2 INHBC IL23A MIR6758 DCTN2 SNORA105C STAC3 PTGES3 TAC3 GLI1 STAT2 RBMS2 GPR182 KIF5A NXPH4 SDR9C7 MIR1228 CNPY2 R3HDM2 COQ10A ZBTB39 ARHGEF25 SPRYD4 TIMELESS B4GALNT1 NDUFA4L2 HBCBP SNORD59A PAN2 DTX3 LRP1 MIR616 PRIM1 DDIT3 MARS NABP2 ANKRD52 SNORD59B BAZ2A PIP4K2C RNF41 LRP1-AS
nsv519293 Chr.12:57189889 - 57243810 on Build GRCh38 Loss STAC3 SHMT2 NXPH4 NDUFA4L2 LRP1 MIR1228
nsv952189 Chr.12:57127118 - 57245617 on Build GRCh38 Deletion STAC3 SHMT2 NXPH4 NDUFA4L2 LRP1-AS LRP1 MIR1228
dgv96n21 Chr.12:57139199 - 57243810 on Build GRCh38 Loss STAC3 SHMT2 NXPH4 NDUFA4L2 LRP1-AS LRP1 MIR1228

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