Hs02786780_cn

• Gene Symbol: C9orf139
• Assay Reference Genome Location: Chr.9:137032597 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 401563
• Gene Name: chromosome 9 open reading frame 139
• Gene Aliases: -
• Location: Chr.9:137027464-137037770 on Build GRCh38
• Assay Gene Location: Within Exon 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
C9orf139	NM_207511.2	2	1048	NP_997394.1
	XM_017014717.1			XP_016870206.1
	AK124899.1	2	1048	BAC85986.1

Target Gene Details

• Entrez Gene ID: 2529
• Gene Name: fucosyltransferase 7
• Gene Aliases: FucT-VII
• Location: Chr.9:137030174-137032840 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FUT7	NM_004479.3	1	244	NP_004470.1
	BC086312.1	1	244	AAH86312.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13007n54	Chr.9:136966179 - 137173890 on Build GRCh38	Loss	GRIN1 ABCA2 C9orf142 MAN1B1 C9orf139 LCNL1 MAN1B1-AS1 FUT7 LOC101930307 SAPCD2 LRRC26 CLIC3 PRR31 TMEM210 UAP1L1 NPDC1 PTGDS ENTPD2 MIR3621 DPP7
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	TMEM203 C9orf139 ANAPC2 TRAF2 LOC101930307 NRARP TOR4A CLIC3 NDOR1 C9orf173-AS1 EDF1 C9orf172 NPDC1 EXD3 NELFB PNPLA7 SSNA1 STPG3 RNF224 MIR4292 MAN1B1 MAN1B1-AS1 FUT7 MIR7114 SAPCD2 CCDC183 NOXA1 MIR4479 LCN12 PRR31 TMEM210 TPRN FAM166A ABCA2 RABL6 C9orf142 C8G CYSRT1 RNF208 LRRC26 NSMF CCDC183-AS1 FBXW5 SLC34A3 MAMDC4 ENTPD8 DPP7 GRIN1 LCNL1 UAP1L1 PHPT1 PTGDS TUBB4B ENTPD2 MIR3621
nsv951206	Chr.9:136944849 - 137114548 on Build GRCh38	Deletion	ABCA2 C9orf142 MAN1B1 C9orf139 LCNL1 MAN1B1-AS1 C8G FUT7 LOC101930307 SAPCD2 CLIC3 LCN12 PRR31 UAP1L1 NPDC1 PTGDS ENTPD2 DPP7
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	LINC01451 C9orf139 TRAF2 LCN10 LOC101930307 SNORA17B CLIC3 SNHG7 EDF1 C9orf172 NPDC1 SNORA17A EGFL7 MIR4292 MAN1B1 AGPAT2 MAN1B1-AS1 FUT7 C9orf163 HSPC324 SAPCD2 CCDC183 LOC100128593 CARD9 MIR4479 LCN12 PRR31 TMEM210 NOTCH1 ABCA2 RABL6 PMPCA C9orf142 C8G MIR4673 LRRC26 MIR4674 CCDC183-AS1 INPP5E FBXW5 LCN15 NALT1 MAMDC4 SDCCAG3 SEC16A DPP7 GRIN1 TMEM141 LCNL1 LCN8 DNLZ LCN6 MIR6722 UAP1L1 PHPT1 PTGDS MIR126 SNAPC4 ENTPD2 FAM69B MIR3621
esv2761561	Chr.9:137030185 - 137191593 on Build GRCh38	Gain	GRIN1 SSNA1 MAN1B1 C9orf139 ANAPC2 MAN1B1-AS1 FUT7 LOC101930307 SAPCD2 LRRC26 TMEM210 UAP1L1 NPDC1 ENTPD2 MIR3621 DPP7
nsv616004	Chr.9:137014976 - 137053021 on Build GRCh38	Loss	ABCA2 NPDC1 C9orf139 FUT7 ENTPD2
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	TMEM203 LINC01451 C9orf139 ANAPC2 TRAF2 LCN10 LOC101930307 NRARP TOR4A SNORA17B CLIC3 SNHG7 NDOR1 C9orf173-AS1 EDF1 C9orf172 NPDC1 SNORA17A EXD3 NELFB EGFL7 SSNA1 STPG3 RNF224 MIR4292 MAN1B1 AGPAT2 MAN1B1-AS1 FUT7 HSPC324 SAPCD2 CCDC183 LOC100128593 MIR4479 LCN12 PRR31 TMEM210 TPRN FAM166A ABCA2 RABL6 C9orf142 C8G CYSRT1 RNF208 LRRC26 CCDC183-AS1 FBXW5 LCN15 SLC34A3 MAMDC4 DPP7 GRIN1 TMEM141 LCNL1 LCN8 LCN6 MIR6722 UAP1L1 PHPT1 PTGDS MIR126 TUBB4B ENTPD2 FAM69B MIR3621

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

glycosyltransferase

Gene Ontology Categories:

Process(es)

CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation
leukocyte migration involved in immune response
protein glycosylation
protein N-linked glycosylation
fucosylation
L-fucose catabolic process

Function(s)

fucosyltransferase activity
alpha-(1->3)-fucosyltransferase activity