Hs02786780_cn

• Gene Symbol: C9orf139
• Assay Reference Genome Location: Chr.9:137032597 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 401563
• Gene Name: chromosome 9 open reading frame 139
• Gene Aliases: -
• Location: Chr.9:137027464-137037770 on Build GRCh38
• Assay Gene Location: Within Exon 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
C9orf139	NM_207511.2	2	1048	NP_997394.1
	XM_017014717.1			XP_016870206.1
	AK124899.1	2	1048	BAC85986.1

Target Gene Details

• Entrez Gene ID: 2529
• Gene Name: fucosyltransferase 7
• Gene Aliases: FucT-VII
• Location: Chr.9:137030174-137032840 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FUT7	NM_004479.3	1	244	NP_004470.1
	BC086312.1	1	244	AAH86312.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13007n54	Chr.9:136966179 - 137173890 on Build GRCh38	Loss	MAN1B1-AS1 LOC101930307 MAN1B1 CLIC3 LRRC26 PRR31 ABCA2 PTGDS MIR3621 NPDC1 TMEM210 GRIN1 SAPCD2 UAP1L1 C9orf139 LCNL1 C9orf142 DPP7 ENTPD2 FUT7
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	TUBB4B RNF224 MAN1B1 TPRN PRR31 EDF1 TOR4A PHPT1 ENTPD2 MAN1B1-AS1 LOC101930307 CLIC3 C9orf173-AS1 ENTPD8 NRARP MIR4479 LRRC26 ABCA2 STPG3 SLC34A3 SAPCD2 TRAF2 C9orf142 SSNA1 ANAPC2 PNPLA7 C9orf172 NSMF FAM166A MIR3621 NPDC1 EXD3 UAP1L1 MAMDC4 MIR7114 MIR4292 TMEM203 NELFB LCN12 CCDC183-AS1 C8G FBXW5 PTGDS NOXA1 TMEM210 GRIN1 RABL6 CYSRT1 C9orf139 CCDC183 LCNL1 DPP7 FUT7 RNF208 NDOR1
nsv951206	Chr.9:136944849 - 137114548 on Build GRCh38	Deletion	MAN1B1-AS1 LOC101930307 LCN12 MAN1B1 CLIC3 C8G PRR31 ABCA2 PTGDS NPDC1 SAPCD2 UAP1L1 C9orf139 LCNL1 C9orf142 DPP7 ENTPD2 FUT7
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	MAN1B1 INPP5E PRR31 MIR4674 TMEM141 EDF1 FAM69B SEC16A MIR6722 PHPT1 LCN8 ENTPD2 SNORA17B NOTCH1 MAN1B1-AS1 LOC101930307 HSPC324 CLIC3 LCN6 MIR4479 LRRC26 ABCA2 SDCCAG3 SAPCD2 TRAF2 DNLZ MIR4673 C9orf142 NALT1 C9orf172 EGFL7 MIR126 MIR3621 NPDC1 SNAPC4 UAP1L1 MAMDC4 CARD9 LINC01451 MIR4292 LCN15 LCN10 LCN12 CCDC183-AS1 C8G AGPAT2 FBXW5 SNHG7 LOC100128593 PTGDS TMEM210 PMPCA GRIN1 RABL6 C9orf139 CCDC183 LCNL1 DPP7 C9orf163 SNORA17A FUT7
esv2761561	Chr.9:137030185 - 137191593 on Build GRCh38	Gain	MAN1B1-AS1 LOC101930307 MAN1B1 LRRC26 MIR3621 NPDC1 TMEM210 GRIN1 SAPCD2 UAP1L1 C9orf139 DPP7 ENTPD2 FUT7 SSNA1 ANAPC2
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	TUBB4B RNF224 MAN1B1 TPRN PRR31 TMEM141 EDF1 FAM69B TOR4A MIR6722 PHPT1 LCN8 ENTPD2 SNORA17B MAN1B1-AS1 LOC101930307 HSPC324 CLIC3 C9orf173-AS1 NRARP LCN6 MIR4479 LRRC26 ABCA2 STPG3 SLC34A3 SAPCD2 TRAF2 C9orf142 SSNA1 ANAPC2 C9orf172 EGFL7 MIR126 FAM166A MIR3621 NPDC1 EXD3 UAP1L1 MAMDC4 LINC01451 MIR4292 LCN15 TMEM203 NELFB LCN10 LCN12 CCDC183-AS1 C8G AGPAT2 FBXW5 SNHG7 LOC100128593 PTGDS TMEM210 GRIN1 RABL6 CYSRT1 C9orf139 CCDC183 LCNL1 DPP7 SNORA17A FUT7 RNF208 NDOR1
nsv616004	Chr.9:137014976 - 137053021 on Build GRCh38	Loss	NPDC1 C9orf139 ABCA2 ENTPD2 FUT7

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

glycosyltransferase

Gene Ontology Categories:

Process(es)

CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation
leukocyte migration involved in immune response
protein glycosylation
protein N-linked glycosylation
fucosylation
L-fucose catabolic process

Function(s)

fucosyltransferase activity
alpha-(1->3)-fucosyltransferase activity