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Gene Symbol
CCHCR1
Assay Reference Genome
Location

Chr.6:31143140 on build GRCh38
Cytoband
6p21.33
Assay ID Hs02811343_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 54535

Gene Name:

 coiled-coil alpha-helical rod protein 1

Gene Aliases:

 C6orf18, HCR, SBP

Location:

 Chr.6:31142439-31158238 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 18 - Exon 19
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CCHCR1 NM_001105563.1 NP_001099033.1
NM_001105564.1 NP_001099034.1
NM_019052.3 NP_061925.2
XM_011514702.2 XP_011513004.1
XM_011514703.1 XP_011513005.1
XM_011514704.2 XP_011513006.1
XM_011514705.1 XP_011513007.1
XM_017010961.1 XP_016866450.1
XM_017010962.1 XP_016866451.1
XM_017010963.1 XP_016866452.1
XM_017010964.1 XP_016866453.1
XM_017010965.1 XP_016866454.1
XM_017010966.1 XP_016866455.1
XM_017010967.1 XP_016866456.1
XM_017010968.1 XP_016866457.1
XM_017010969.1 XP_016866458.1
XM_017010970.1 XP_016866459.1
AB029331.1 BAA81890.1
AB112474.1 BAD05130.1
AB112475.1 BAD05131.1
AF216493.1 AAF74221.1
AK000204.1 BAA91007.1
AK000217.1 BAA91016.1
AK000533.1 BAA91236.1
AK289446.1
AK295494.1
AY029160.1 AAK55759.1
BC110534.1 AAI10535.1
BC110535.1 AAI10536.1
CR457227.1 CAG33508.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv525933 Chr.6:31113428 - 31174468 on Build GRCh38 Loss POU5F1 PSORS1C2 TCF19 PSORS1C1 PSORS1C3 CCHCR1 CDSN
nsv1074389 Chr.6:29116522 - 31446623 on Build GRCh38 Deletion SFTA2 LINC00243 ABCF1 TRIM26 PSORS1C1 PSORS1C3 HCG22 MDC1 ATAT1 HCG17 GNL1 MIR4640 TRIM39-RPP21 HCG20 VARS2 POU5F1 OR11A1 ZFP57 HLA-B DDR1 HCG4B HLA-H TRIM10 HLA-C MIR6891 HLA-J MICA NRM LOC554223 HCG18 TUBB HCG4 MOG OR12D3 UBD CCHCR1 CDSN IER3 MUC22 MDC1-AS1 C6orf136 PPP1R18 TCF19 RNF39 OR5V1 HCG8 TRIM39 DPCR1 TRIM31-AS1 MRPS18B GTF2H4 MIR877 OR2H2 RPP21 LOC101929006 HLA-L PRR3 ZNRD1ASP MAS1L PPP1R10 TRIM40 OR12D2 IFITM4P MUC21 C6orf15 LINC01015 HLA-E HLA-G GABBR1 PSORS1C2 OR14J1 PPP1R11 HLA-F-AS1 LOC105375014 SNORD32B HLA-K HCG9 OR2J2 HCG27 HLA-A DHX16 HLA-F FLOT1 TRIM31 ZNRD1 OR10C1 TRIM15 OR2H1
nsv601481 Chr.6:30454855 - 31316476 on Build GRCh38 Loss SFTA2 MUC22 MDC1-AS1 LINC00243 ABCF1 C6orf136 PPP1R18 TCF19 DPCR1 PSORS1C1 PSORS1C3 HCG22 MDC1 ATAT1 GNL1 MIR4640 MRPS18B GTF2H4 HCG20 MIR877 VARS2 POU5F1 PRR3 DDR1 PPP1R10 MUC21 C6orf15 HLA-C HLA-E PSORS1C2 NRM TUBB LOC105375014 HCG27 DHX16 FLOT1 CCHCR1 CDSN IER3
nsv428140 Chr.6:31060513 - 31494329 on Build GRCh38 Gain+Loss HCP5 MIR6891 PSORS1C2 TCF19 MICA PSORS1C1 PSORS1C3 LOC102725068 POU5F1 HLA-B HCG26 HCG27 C6orf15 CCHCR1 CDSN HLA-C
nsv524061 Chr.6:31139310 - 31166166 on Build GRCh38 Loss POU5F1 PSORS1C2 TCF19 PSORS1C1 CCHCR1
nsv1122126 Chr.6:28628023 - 31244023 on Build GRCh38 Deletion SFTA2 LINC00243 ABCF1 TRIM26 PSORS1C1 PSORS1C3 OR2W1 HCG22 MDC1 ATAT1 HCG17 GNL1 MIR4640 TRIM39-RPP21 HCG20 VARS2 POU5F1 OR2J3 OR11A1 ZFP57 LINC01623 DDR1 HCG4B HLA-H TRIM10 HCG16 HLA-J NRM LOC554223 LINC01556 HCG18 TUBB HCG4 MOG OR12D3 UBD OR2B3 CCHCR1 CDSN IER3 MUC22 MDC1-AS1 C6orf136 ZNF311 PPP1R18 TCF19 RNF39 OR5V1 HCG8 TRIM39 DPCR1 TRIM31-AS1 MRPS18B GTF2H4 MIR877 OR2H2 LINC00533 RPP21 LOC101929006 HLA-L PRR3 ZNRD1ASP MAS1L PPP1R10 TRIM40 OR12D2 IFITM4P MUC21 C6orf15 LINC01015 HCG14 HLA-E HLA-G GABBR1 PSORS1C2 OR14J1 PPP1R11 HLA-F-AS1 LOC105375014 SNORD32B HLA-K HCG9 OR2J2 LOC100129636 HCG27 HLA-A TRIM27 DHX16 HLA-F FLOT1 TRIM31 ZNRD1 OR10C1 TRIM15 OR2H1
nsv1144137 Chr.6:29720323 - 31338123 on Build GRCh38 Deletion SFTA2 LINC00243 ABCF1 TRIM26 PSORS1C1 PSORS1C3 HCG22 MDC1 ATAT1 HCG17 GNL1 MIR4640 TRIM39-RPP21 HCG20 VARS2 POU5F1 DDR1 HCG4B HLA-H TRIM10 HLA-C HLA-J NRM LOC554223 HCG18 TUBB HCG4 CCHCR1 CDSN IER3 MUC22 MDC1-AS1 C6orf136 PPP1R18 TCF19 RNF39 HCG8 TRIM39 DPCR1 TRIM31-AS1 MRPS18B GTF2H4 MIR877 RPP21 HLA-L PRR3 ZNRD1ASP PPP1R10 TRIM40 IFITM4P MUC21 C6orf15 HLA-E HLA-G PSORS1C2 PPP1R11 HLA-F-AS1 LOC105375014 HLA-K HCG9 HCG27 HLA-A DHX16 HLA-F FLOT1 TRIM31 ZNRD1 TRIM15
nsv601264 Chr.6:29883666 - 31320716 on Build GRCh38 Loss SFTA2 LINC00243 ABCF1 TRIM26 PSORS1C1 PSORS1C3 HCG22 MDC1 ATAT1 HCG17 GNL1 MIR4640 TRIM39-RPP21 HCG20 VARS2 POU5F1 DDR1 HCG4B HLA-H TRIM10 HLA-C HLA-J NRM HCG18 TUBB CCHCR1 CDSN IER3 MUC22 MDC1-AS1 C6orf136 PPP1R18 TCF19 RNF39 HCG8 TRIM39 DPCR1 TRIM31-AS1 MRPS18B GTF2H4 MIR877 RPP21 HLA-L PRR3 ZNRD1ASP PPP1R10 TRIM40 MUC21 C6orf15 HLA-E PSORS1C2 PPP1R11 LOC105375014 HLA-K HCG9 HCG27 HLA-A DHX16 FLOT1 TRIM31 ZNRD1 TRIM15
esv2731791 Chr.6:30404802 - 31346410 on Build GRCh38 Deletion SFTA2 MUC22 MDC1-AS1 LINC00243 ABCF1 C6orf136 PPP1R18 TCF19 DPCR1 PSORS1C1 PSORS1C3 HCG22 MDC1 ATAT1 GNL1 MIR4640 MRPS18B GTF2H4 HCG20 MIR877 VARS2 POU5F1 PRR3 DDR1 PPP1R10 MUC21 C6orf15 HLA-C HLA-E PSORS1C2 NRM TUBB LOC105375014 HCG27 DHX16 FLOT1 CCHCR1 CDSN IER3
dgv1174e214 Chr.6:31139843 - 31176217 on Build GRCh38 Gain POU5F1 TCF19 PSORS1C1 PSORS1C3 CCHCR1
esv3411275 Chr.6:29981607 - 31490616 on Build GRCh38 Duplication HCP5 SFTA2 LINC00243 ABCF1 TRIM26 PSORS1C1 PSORS1C3 HCG22 MDC1 ATAT1 HCG17 GNL1 MIR4640 TRIM39-RPP21 HCG20 VARS2 POU5F1 HLA-B DDR1 TRIM10 HLA-C MIR6891 HLA-J MICA NRM HCG18 TUBB CCHCR1 CDSN IER3 MUC22 MDC1-AS1 C6orf136 PPP1R18 TCF19 RNF39 HCG8 TRIM39 DPCR1 TRIM31-AS1 MRPS18B GTF2H4 MIR877 RPP21 HLA-L PRR3 ZNRD1ASP HCG26 PPP1R10 TRIM40 MUC21 C6orf15 HLA-E PSORS1C2 PPP1R11 LOC102725068 LOC105375014 HCG27 DHX16 FLOT1 TRIM31 ZNRD1 TRIM15

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s)


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