Hs02817436_cn

• Gene Symbol: PCDHA1
• Assay Reference Genome Location: Chr.5:140851841 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56147
• Gene Name: protocadherin alpha 1
• Gene Aliases: PCDH-ALPHA1
• Location: Chr.5:140786136-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA1	NM_018900.3			NP_061723.1
	NM_031411.2			NP_113599.1
	AF152305.1			AAD43699.1
	AF169695.1			AAF89692.1

Target Gene Details

• Entrez Gene ID: 56146
• Gene Name: protocadherin alpha 2
• Gene Aliases: PCDH-ALPHA2
• Location: Chr.5:140794859-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA2	NM_018905.2			NP_061728.1
	AF152310.1			AAD43704.1

Target Gene Details

• Entrez Gene ID: 56145
• Gene Name: protocadherin alpha 3
• Gene Aliases: PCDH-ALPHA3
• Location: Chr.5:140801198-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA3	NM_018906.2			NP_061729.1
	AF152311.1			AAD43705.1

Target Gene Details

• Entrez Gene ID: 56144
• Gene Name: protocadherin alpha 4
• Gene Aliases: CNR1, CNRN1, CRNR1, PCDH-ALPHA4
• Location: Chr.5:140807074-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA4	NM_018907.3			NP_061730.1
	AB208925.1			BAD92162.1
	AF152312.1			AAD43706.1

Target Gene Details

• Entrez Gene ID: 56143
• Gene Name: protocadherin alpha 5
• Gene Aliases: CNR6, CNRN6, CNRS6, CRNR6, PCDH-ALPHA5
• Location: Chr.5:140821776-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA5	NM_018908.2			NP_061731.1
	AB208863.1			BAD92100.1
	AF152313.1			AAD43707.1
	BC033735.1			AAH33735.1

Target Gene Details

• Entrez Gene ID: 56142
• Gene Name: protocadherin alpha 6
• Gene Aliases: CNR2, CNRN2, CNRS2, CRNR2, PCDH-ALPHA6
• Location: Chr.5:140827922-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA6	NM_018909.3			NP_061732.1
	NM_031849.2			NP_114037.1
	AB209205.1			BAD92442.1
	AF152314.1			AAD43708.1
	AF169694.1			AAF89691.1
	BC036674.2			AAH36674.1

Target Gene Details

• Entrez Gene ID: 56141
• Gene Name: protocadherin alpha 7
• Gene Aliases: CNR4, CNRN4, CNRS4, CRNR4, PCDH-ALPHA7
• Location: Chr.5:140834384-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA7	NM_018910.2			NP_061733.1
	AF152315.1			AAD43709.1

Target Gene Details

• Entrez Gene ID: 56140
• Gene Name: protocadherin alpha 8
• Gene Aliases: PCDH-ALPHA8
• Location: Chr.5:140841322-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA8	NM_018911.2			NP_061734.1
	AF152316.1			AAD43710.1

Target Gene Details

• Entrez Gene ID: 9752
• Gene Name: protocadherin alpha 9
• Gene Aliases: PCDH-ALPHA9
• Location: Chr.5:140847772-141012344 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA9	NM_014005.4	1	4070	NP_054724.1
	NM_031857.1			NP_114063.1
	AB002343.1	1	4070
	AF152317.1			AAD43711.1
	AJ007610.1			CAC22257.1
	AK314303.1
	BC104802.1			AAI04803.1
	BC104804.1			AAI04805.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv819207	Chr.5:140842721 - 140859461 on Build GRCh38	Gain	PCDHA9 PCDHA3 PCDHA7 PCDHA2 PCDHA10 PCDHA5 PCDHA8 PCDHA6 PCDHA1 PCDHA4
dgv1651e212	Chr.5:140838196 - 140852242 on Build GRCh38	Loss	PCDHA9 PCDHA3 PCDHA7 PCDHA2 PCDHA5 PCDHA8 PCDHA6 PCDHA1 PCDHA4
esv33939	Chr.5:140837491 - 140859238 on Build GRCh38	Gain+Loss	PCDHA9 PCDHA3 PCDHA7 PCDHA2 PCDHA10 PCDHA5 PCDHA8 PCDHA6 PCDHA1 PCDHA4
nsv10753	Chr.5:140842575 - 140859579 on Build GRCh38	Gain	PCDHA9 PCDHA3 PCDHA7 PCDHA2 PCDHA10 PCDHA5 PCDHA8 PCDHA6 PCDHA1 PCDHA4
dgv10101n54	Chr.5:140851652 - 140856743 on Build GRCh38	Loss	PCDHA9 PCDHA3 PCDHA7 PCDHA2 PCDHA10 PCDHA5 PCDHA8 PCDHA6 PCDHA1 PCDHA4
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHA13 PCDHB1 PCDHA11 PCDHB9 PCDHGB6 PCDHA3 PCDHB12 PCDHGB4 PCDHA2 PCDHGA1 PCDHA8 PCDHGB7 PCDHGB8P PCDHB18P PCDHA1 PCDHA4 PCDHGA11 PCDHAC2 PCDHB3 PCDHGA2 PCDHB11 TAF7 PCDHGA12 PCDHGA7 PCDHB8 PCDHB7 PCDHGA5 PCDHA5 PCDHGB2 PCDHB17P PCDHGA8 PCDHA7 PCDHB4 PCDHB5 PCDHA10 PCDHGA10 PCDHB10 PCDHA9 PCDHB19P PCDHB14 PCDHA6 PCDHB16 PCDHB2 LOC101926905 PCDHGA9 PCDHGB3 PCDHA12 PCDHB6 SLC25A2 PCDHGA3 PCDHAC1 PCDHGA6 PCDHB15 PCDHGB5 PCDHGA4 PCDHGB1 PCDHB13
dgv1652e212	Chr.5:140839141 - 140864158 on Build GRCh38	Loss	PCDHA9 PCDHA3 PCDHA7 PCDHA2 PCDHA10 PCDHA5 PCDHA8 PCDHA6 PCDHA1 PCDHA4
dgv138e203	Chr.5:140838209 - 140874533 on Build GRCh38	Loss	PCDHA9 PCDHA3 PCDHA7 PCDHA11 PCDHA2 PCDHA10 PCDHA5 PCDHA8 PCDHA6 PCDHA1 PCDHA4
nsv515909	Chr.5:140848414 - 140852761 on Build GRCh38	Loss	PCDHA9 PCDHA3 PCDHA7 PCDHA2 PCDHA5 PCDHA8 PCDHA6 PCDHA1 PCDHA4
esv3606958	Chr.5:140842689 - 140859762 on Build GRCh38	Loss	PCDHA9 PCDHA3 PCDHA7 PCDHA2 PCDHA10 PCDHA5 PCDHA8 PCDHA6 PCDHA1 PCDHA4
esv2421858	Chr.5:140844251 - 140857963 on Build GRCh38	Deletion	PCDHA9 PCDHA3 PCDHA7 PCDHA2 PCDHA10 PCDHA5 PCDHA8 PCDHA6 PCDHA1 PCDHA4
esv3566721	Chr.5:140840563 - 140861415 on Build GRCh38	Deletion	PCDHA9 PCDHA3 PCDHA7 PCDHA2 PCDHA10 PCDHA5 PCDHA8 PCDHA6 PCDHA1 PCDHA4
nsv514324	Chr.5:140844231 - 140859031 on Build GRCh38	Loss	PCDHA9 PCDHA3 PCDHA7 PCDHA2 PCDHA10 PCDHA5 PCDHA8 PCDHA6 PCDHA1 PCDHA4
esv26168	Chr.5:140842564 - 140859300 on Build GRCh38	Gain	PCDHA9 PCDHA3 PCDHA7 PCDHA2 PCDHA10 PCDHA5 PCDHA8 PCDHA6 PCDHA1 PCDHA4
dgv10096n54	Chr.5:140847633 - 140852761 on Build GRCh38	Loss	PCDHA9 PCDHA3 PCDHA7 PCDHA2 PCDHA5 PCDHA8 PCDHA6 PCDHA1 PCDHA4
dgv3182n106	Chr.5:140842552 - 140859353 on Build GRCh38	Deletion	PCDHA9 PCDHA3 PCDHA7 PCDHA2 PCDHA10 PCDHA5 PCDHA8 PCDHA6 PCDHA1 PCDHA4
dgv1043e199	Chr.5:140842260 - 140861207 on Build GRCh38	Deletion	PCDHA9 PCDHA3 PCDHA7 PCDHA2 PCDHA10 PCDHA5 PCDHA8 PCDHA6 PCDHA1 PCDHA4
nsv1024237	Chr.5:140810775 - 140852242 on Build GRCh38	Loss	PCDHA9 PCDHA3 PCDHA7 PCDHA2 PCDHA5 PCDHA8 PCDHA6 PCDHA1 PCDHA4
esv2730839	Chr.5:140842540 - 140859393 on Build GRCh38	Deletion	PCDHA9 PCDHA3 PCDHA7 PCDHA2 PCDHA10 PCDHA5 PCDHA8 PCDHA6 PCDHA1 PCDHA4
nsv1135376	Chr.5:140849315 - 140859915 on Build GRCh38	Deletion	PCDHA9 PCDHA3 PCDHA7 PCDHA2 PCDHA10 PCDHA5 PCDHA8 PCDHA6 PCDHA1 PCDHA4
esv2657537	Chr.5:140850410 - 140855957 on Build GRCh38	Deletion	PCDHA9 PCDHA3 PCDHA7 PCDHA2 PCDHA10 PCDHA5 PCDHA8 PCDHA6 PCDHA1 PCDHA4
nsv830508	Chr.5:140675388 - 140869073 on Build GRCh38	Loss	PCDHA7 PCDHA11 PCDHA10 VTRNA1-3 VTRNA1-1 PCDHA9 PCDHA3 PCDHA2 HARS2 VTRNA1-2 PCDHA5 PCDHA8 PCDHA6 ZMAT2 PCDHA1 PCDHA4 HARS
nsv599841	Chr.5:140841349 - 140856513 on Build GRCh38	Loss	PCDHA9 PCDHA3 PCDHA7 PCDHA2 PCDHA10 PCDHA5 PCDHA8 PCDHA6 PCDHA1 PCDHA4
dgv10097n54	Chr.5:140849850 - 140856743 on Build GRCh38	Loss	PCDHA9 PCDHA3 PCDHA7 PCDHA2 PCDHA10 PCDHA5 PCDHA8 PCDHA6 PCDHA1 PCDHA4
esv3890744	Chr.5:140846323 - 140857963 on Build GRCh38	Loss	PCDHA9 PCDHA3 PCDHA7 PCDHA2 PCDHA10 PCDHA5 PCDHA8 PCDHA6 PCDHA1 PCDHA4
esv29977	Chr.5:140843471 - 140856955 on Build GRCh38	Gain	PCDHA9 PCDHA3 PCDHA7 PCDHA2 PCDHA10 PCDHA5 PCDHA8 PCDHA6 PCDHA1 PCDHA4
dgv10098n54	Chr.5:140850785 - 140856743 on Build GRCh38	Loss	PCDHA9 PCDHA3 PCDHA7 PCDHA2 PCDHA10 PCDHA5 PCDHA8 PCDHA6 PCDHA1 PCDHA4

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
nervous system development

Function(s)

calcium ion binding
protein binding