Hs02817436_cn

• Gene Symbol: PCDHA1
• Assay Reference Genome Location: Chr.5:140851841 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56147
• Gene Name: protocadherin alpha 1
• Gene Aliases: PCDH-ALPHA1
• Location: Chr.5:140786136-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA1	NM_018900.3			NP_061723.1
	NM_031411.2			NP_113599.1
	AF152305.1			AAD43699.1
	AF169695.1			AAF89692.1

Target Gene Details

• Entrez Gene ID: 56146
• Gene Name: protocadherin alpha 2
• Gene Aliases: PCDH-ALPHA2
• Location: Chr.5:140794859-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA2	NM_018905.2			NP_061728.1
	AF152310.1			AAD43704.1

Target Gene Details

• Entrez Gene ID: 56145
• Gene Name: protocadherin alpha 3
• Gene Aliases: PCDH-ALPHA3
• Location: Chr.5:140801198-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA3	NM_018906.2			NP_061729.1
	AF152311.1			AAD43705.1

Target Gene Details

• Entrez Gene ID: 56144
• Gene Name: protocadherin alpha 4
• Gene Aliases: CNR1, CNRN1, CRNR1, PCDH-ALPHA4
• Location: Chr.5:140807074-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA4	NM_018907.3			NP_061730.1
	AB208925.1			BAD92162.1
	AF152312.1			AAD43706.1

Target Gene Details

• Entrez Gene ID: 56143
• Gene Name: protocadherin alpha 5
• Gene Aliases: CNR6, CNRN6, CNRS6, CRNR6, PCDH-ALPHA5
• Location: Chr.5:140821776-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA5	NM_018908.2			NP_061731.1
	AB208863.1			BAD92100.1
	AF152313.1			AAD43707.1
	BC033735.1			AAH33735.1

Target Gene Details

• Entrez Gene ID: 56142
• Gene Name: protocadherin alpha 6
• Gene Aliases: CNR2, CNRN2, CNRS2, CRNR2, PCDH-ALPHA6
• Location: Chr.5:140827922-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA6	NM_018909.3			NP_061732.1
	NM_031849.2			NP_114037.1
	AB209205.1			BAD92442.1
	AF152314.1			AAD43708.1
	AF169694.1			AAF89691.1
	BC036674.2			AAH36674.1

Target Gene Details

• Entrez Gene ID: 56141
• Gene Name: protocadherin alpha 7
• Gene Aliases: CNR4, CNRN4, CNRS4, CRNR4, PCDH-ALPHA7
• Location: Chr.5:140834384-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA7	NM_018910.2			NP_061733.1
	AF152315.1			AAD43709.1

Target Gene Details

• Entrez Gene ID: 56140
• Gene Name: protocadherin alpha 8
• Gene Aliases: PCDH-ALPHA8
• Location: Chr.5:140841322-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA8	NM_018911.2			NP_061734.1
	AF152316.1			AAD43710.1

Target Gene Details

• Entrez Gene ID: 9752
• Gene Name: protocadherin alpha 9
• Gene Aliases: PCDH-ALPHA9
• Location: Chr.5:140847772-141012344 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA9	NM_014005.4	1	4070	NP_054724.1
	NM_031857.1			NP_114063.1
	AB002343.1	1	4070
	AF152317.1			AAD43711.1
	AJ007610.1			CAC22257.1
	AK314303.1
	BC104802.1			AAI04803.1
	BC104804.1			AAI04805.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv819207	Chr.5:140842721 - 140859461 on Build GRCh38	Gain	PCDHA8 PCDHA9 PCDHA6 PCDHA7 PCDHA10 PCDHA2 PCDHA4 PCDHA5 PCDHA1 PCDHA3
esv33939	Chr.5:140837491 - 140859238 on Build GRCh38	Gain+Loss	PCDHA8 PCDHA9 PCDHA6 PCDHA7 PCDHA10 PCDHA2 PCDHA4 PCDHA5 PCDHA1 PCDHA3
dgv1651e212	Chr.5:140838196 - 140852242 on Build GRCh38	Loss	PCDHA8 PCDHA9 PCDHA6 PCDHA7 PCDHA2 PCDHA4 PCDHA5 PCDHA1 PCDHA3
nsv10753	Chr.5:140842575 - 140859579 on Build GRCh38	Gain	PCDHA8 PCDHA9 PCDHA6 PCDHA7 PCDHA10 PCDHA2 PCDHA4 PCDHA5 PCDHA1 PCDHA3
nsv599870	Chr.5:140851652 - 140853802 on Build GRCh38	Loss	PCDHA8 PCDHA9 PCDHA6 PCDHA7 PCDHA2 PCDHA4 PCDHA5 PCDHA1 PCDHA3
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHA8 PCDHB2 PCDHB16 PCDHA7 PCDHAC2 PCDHB7 TAF7 PCDHB1 PCDHGA10 PCDHGA8 PCDHB9 PCDHGA9 PCDHA10 PCDHGA11 PCDHGA1 PCDHGA6 PCDHA6 PCDHGA12 PCDHB18P PCDHB6 PCDHA5 PCDHB12 PCDHGB5 PCDHB4 PCDHB15 PCDHGB8P PCDHGA3 PCDHGA5 PCDHA12 PCDHB13 PCDHA11 PCDHB14 PCDHA4 PCDHGB7 PCDHA1 PCDHGB4 PCDHGB1 PCDHA13 PCDHB3 PCDHA9 PCDHB19P PCDHA2 PCDHGA4 PCDHA3 SLC25A2 PCDHB5 PCDHB17P PCDHB8 LOC101926905 PCDHGA2 PCDHGA7 PCDHB10 PCDHAC1 PCDHGB6 PCDHGB2 PCDHB11 PCDHGB3
dgv138e203	Chr.5:140838209 - 140874533 on Build GRCh38	Loss	PCDHA8 PCDHA9 PCDHA6 PCDHA7 PCDHA11 PCDHA10 PCDHA2 PCDHA4 PCDHA5 PCDHA1 PCDHA3
dgv1653e212	Chr.5:140839141 - 140874132 on Build GRCh38	Loss	PCDHA8 PCDHA9 PCDHA6 PCDHA7 PCDHA11 PCDHA10 PCDHA2 PCDHA4 PCDHA5 PCDHA1 PCDHA3
nsv515909	Chr.5:140848414 - 140852761 on Build GRCh38	Loss	PCDHA8 PCDHA9 PCDHA6 PCDHA7 PCDHA2 PCDHA4 PCDHA5 PCDHA1 PCDHA3
esv3606958	Chr.5:140842689 - 140859762 on Build GRCh38	Loss	PCDHA8 PCDHA9 PCDHA6 PCDHA7 PCDHA10 PCDHA2 PCDHA4 PCDHA5 PCDHA1 PCDHA3
nsv442962	Chr.5:140844251 - 140864171 on Build GRCh38	Loss	PCDHA8 PCDHA9 PCDHA6 PCDHA7 PCDHA10 PCDHA2 PCDHA4 PCDHA5 PCDHA1 PCDHA3
esv3566721	Chr.5:140840563 - 140861415 on Build GRCh38	Deletion	PCDHA8 PCDHA9 PCDHA6 PCDHA7 PCDHA10 PCDHA2 PCDHA4 PCDHA5 PCDHA1 PCDHA3
nsv514324	Chr.5:140844231 - 140859031 on Build GRCh38	Loss	PCDHA8 PCDHA9 PCDHA6 PCDHA7 PCDHA10 PCDHA2 PCDHA4 PCDHA5 PCDHA1 PCDHA3
dgv724n27	Chr.5:140847633 - 140852761 on Build GRCh38	Loss	PCDHA8 PCDHA9 PCDHA6 PCDHA7 PCDHA2 PCDHA4 PCDHA5 PCDHA1 PCDHA3
dgv971n67	Chr.5:140842564 - 140859431 on Build GRCh38	Loss	PCDHA8 PCDHA9 PCDHA6 PCDHA7 PCDHA10 PCDHA2 PCDHA4 PCDHA5 PCDHA1 PCDHA3
nsv1024237	Chr.5:140810775 - 140852242 on Build GRCh38	Loss	PCDHA8 PCDHA9 PCDHA6 PCDHA7 PCDHA2 PCDHA4 PCDHA5 PCDHA1 PCDHA3
dgv1043e199	Chr.5:140842260 - 140861207 on Build GRCh38	Deletion	PCDHA8 PCDHA9 PCDHA6 PCDHA7 PCDHA10 PCDHA2 PCDHA4 PCDHA5 PCDHA1 PCDHA3
dgv3182n106	Chr.5:140842552 - 140859353 on Build GRCh38	Deletion	PCDHA8 PCDHA9 PCDHA6 PCDHA7 PCDHA10 PCDHA2 PCDHA4 PCDHA5 PCDHA1 PCDHA3
esv2730839	Chr.5:140842540 - 140859393 on Build GRCh38	Deletion	PCDHA8 PCDHA9 PCDHA6 PCDHA7 PCDHA10 PCDHA2 PCDHA4 PCDHA5 PCDHA1 PCDHA3
nsv1135376	Chr.5:140849315 - 140859915 on Build GRCh38	Deletion	PCDHA8 PCDHA9 PCDHA6 PCDHA7 PCDHA10 PCDHA2 PCDHA4 PCDHA5 PCDHA1 PCDHA3
esv2657537	Chr.5:140850410 - 140855957 on Build GRCh38	Deletion	PCDHA8 PCDHA9 PCDHA6 PCDHA7 PCDHA10 PCDHA2 PCDHA4 PCDHA5 PCDHA1 PCDHA3
nsv830508	Chr.5:140675388 - 140869073 on Build GRCh38	Loss	HARS2 VTRNA1-1 HARS PCDHA8 PCDHA6 PCDHA7 PCDHA11 ZMAT2 VTRNA1-2 PCDHA4 PCDHA5 PCDHA1 VTRNA1-3 PCDHA9 PCDHA10 PCDHA2 PCDHA3
nsv599841	Chr.5:140841349 - 140856513 on Build GRCh38	Loss	PCDHA8 PCDHA9 PCDHA6 PCDHA7 PCDHA10 PCDHA2 PCDHA4 PCDHA5 PCDHA1 PCDHA3
nsv599859	Chr.5:140849850 - 140852165 on Build GRCh38	Loss	PCDHA8 PCDHA9 PCDHA6 PCDHA7 PCDHA2 PCDHA4 PCDHA5 PCDHA1 PCDHA3
dgv10094n54	Chr.5:140846323 - 140860465 on Build GRCh38	Loss	PCDHA8 PCDHA9 PCDHA6 PCDHA7 PCDHA10 PCDHA2 PCDHA4 PCDHA5 PCDHA1 PCDHA3
esv29977	Chr.5:140843471 - 140856955 on Build GRCh38	Gain	PCDHA8 PCDHA9 PCDHA6 PCDHA7 PCDHA10 PCDHA2 PCDHA4 PCDHA5 PCDHA1 PCDHA3
dgv10099n54	Chr.5:140850785 - 140859109 on Build GRCh38	Loss	PCDHA8 PCDHA9 PCDHA6 PCDHA7 PCDHA10 PCDHA2 PCDHA4 PCDHA5 PCDHA1 PCDHA3

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
nervous system development

Function(s)

calcium ion binding
protein binding