Genomic Map
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Target Gene Details
Entrez Gene ID: | 85464 |
Gene Name: | slingshot protein phosphatase 2 |
Gene Aliases: |
SSH-2, SSH-2L |
Location: |
Chr.17:29625938-29930239 on Build GRCh38 |
Assay Gene Location: | Within Exon 24 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| SSH2 | NM_001282129.1 | 16 | 7044 | NP_001269058.1 |
| NM_033389.3 | 15 | 6775 | NP_203747.2 | |
| XM_005258058.3 | 17 | 6937 | XP_005258115.1 | |
| XM_005258059.2 | 14 | 6911 | XP_005258116.1 | |
| XM_005258060.3 | 3 | 5504 | XP_005258117.1 | |
| XM_006722149.3 | 14 | 10542 | XP_006722212.1 | |
| XM_011525402.2 | 16 | 6772 | XP_011523704.1 | |
| XM_011525404.2 | 14 | 7535 | XP_011523706.1 | |
| XM_011525405.2 | 14 | 7583 | XP_011523707.1 | |
| XM_011525406.2 | 13 | 6862 | XP_011523708.1 | |
| XM_011525407.1 | 13 | 6607 | XP_011523709.1 | |
| XM_017025251.1 | 16 | 6980 | XP_016880740.1 | |
| XM_017025252.1 | 14 | 6841 | XP_016880741.1 | |
| AB051512.1 | 3 | 5593 | BAB21816.1 | |
| AB099290.1 | 15 | 6735 | BAC97813.1 | |
| AK094204.1 | 1 | 236 | ||
| AK094429.1 | 1 | 838 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv833410 | Chr.17:29607083 - 29776736 on Build GRCh38 | Loss |
 CORO6
SSH2
ANKRD13B
|
| nsv833409 | Chr.17:29465646 - 29655807 on Build GRCh38 | Gain |
CORO6
SSH2
TP53I13
ABHD15
GIT1
ANKRD13B
TAOK1
|
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Additional Information:
For this assay, SNP(s) [rs75054947] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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