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Gene Symbol
PHF1
Assay Reference Genome
Location

Chr.6:33416073 on build GRCh38
Cytoband
6p21.32
Assay ID Hs02863781_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 5252

Gene Name:

 PHD finger protein 1

Gene Aliases:

 MTF2L2, PCL1, PHF2, TDRD19C, hPHF1

Location:

 Chr.6:33410751-33416453 on Build GRCh38

Assay Gene Location:

 Within Exon 16
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PHF1 NM_002636.4 14 1809 NP_002627.1
NM_024165.2 15 1915 NP_077084.1
NR_027692.1 15 1904
XM_011514662.1 15 1832 XP_011512964.1
XM_011514663.1 15 1829 XP_011512965.1
XM_011514664.1 14 1736 XP_011512966.1
XM_011514665.1 15 1852 XP_011512967.1
XM_011514666.1 15 1849 XP_011512968.1
XM_011514669.1 14 1642 XP_011512971.1
XM_017010939.1 13 1520 XP_016866428.1
AF029678.1 14 1629 AAC52062.1
AF052205.1 15 1731 AAC13273.1
AK225913.1 14 1917
BC008834.2 15 1883 AAH08834.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830637 Chr.6:33361588 - 33542927 on Build GRCh38 Loss SYNGAP1 MIR5004 KIFC1 ZBTB9 PHF1 CUTA
nsv830635 Chr.6:33270228 - 33446010 on Build GRCh38 Loss KIFC1 RGL2 TAPBP MIR6873 CUTA WDR46 DAXX ZBTB22 SYNGAP1 MIR5004 VPS52 PFDN6 B3GALT4 PHF1 MIR6834 RPS18
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion SKIV2L C6orf10 DDAH2 GPANK1 GPSM3 ABHD16A NFKBIL1 HLA-DQA1 SYNGAP1 SAPCD1-AS1 LOC101929163 HLA-DRB1 CFB HSPA1L HSPA1B TNXB C6orf47 C4A HLA-DRB6 NEU1 DXO PPT2-EGFL8 ZBTB12 COL11A2 CUTA CLIC1 CYP21A1P AGER TAP1 APOM LY6G6D LY6G5C NELFE HLA-DQB2 KIFC1 HSD17B8 TAPBP C6orf48 ATP6V1G2-DDX39B LST1 TNXA LSM2 MIR5004 MIR6832 LY6G6F HLA-DQB1-AS1 PHF1 HLA-DOA RNF5 HLA-DMA HCG26 HLA-DRB5 PSMB8 TNF LOC100507547 RGL2 MSH5-SAPCD1 VWA7 EHMT2 DAXX NCR3 MIR219A1 PSMB8-AS1 PPP1R2P1 BRD2 MIR6721 DDX39B SLC44A4 RPS18 PPT2 BTNL2 HLA-DRA STK19 PRRT1 MICB MSH5 PSMB9 C6orf25 MCCD1 NOTCH4 HLA-DQB1 MIR4646 SNORD117 LTB HCG23 SNORD84 PRRC2A LY6G6E HLA-DPB2 LOC100287329 LOC100294145 RING1 SAPCD1 BAG6 C4B RXRB FKBPL HLA-DMB WDR46 SLC39A7 LOC102725068 CYP21A2 HCP5 C2 CSNK2B VARS MIR6833 B3GALT4 HLA-DPA1 HLA-DQA2 AGPAT1 TAP2 HCG25 SNORD52 LTA HCG24 ZBTB22 EGFL8 AIF1 ATP6V1G2 VPS52 PFDN6 SNORD48 HLA-DOB MIR6834 ZBTB9 C2-AS1 MIR6873 DDX39B-AS1 ATF6B HSPA1A MIR1236 HLA-DPB1 MIR3135B PBX2 LY6G5B LY6G6C SNORA38
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion SKIV2L C6orf10 DDAH2 GPANK1 GPSM3 ABHD16A NFKBIL1 HLA-DQA1 SYNGAP1 SAPCD1-AS1 LOC101929163 HLA-DRB1 CFB HSPA1L HSPA1B TNXB C6orf47 C4A HLA-DRB6 NEU1 DXO PPT2-EGFL8 ZBTB12 COL11A2 CUTA CLIC1 CYP21A1P AGER TAP1 APOM LY6G6D LY6G5C NELFE HLA-DQB2 KIFC1 HSD17B8 TAPBP C6orf48 ATP6V1G2-DDX39B LST1 TNXA LSM2 MIR5004 MIR6832 LY6G6F HLA-DQB1-AS1 PHF1 HLA-DOA RNF5 HLA-DMA HCG26 HLA-DRB5 PSMB8 TNF LOC100507547 RGL2 MSH5-SAPCD1 VWA7 EHMT2 DAXX NCR3 MIR219A1 PSMB8-AS1 PPP1R2P1 BRD2 MIR6721 DDX39B SLC44A4 RPS18 PPT2 BTNL2 HLA-DRA STK19 PRRT1 MICB MSH5 PSMB9 C6orf25 MCCD1 NOTCH4 HLA-DQB1 MIR4646 SNORD117 LTB HCG23 SNORD84 PRRC2A LY6G6E HLA-DPB2 LOC100287329 LOC100294145 RING1 SAPCD1 BAG6 C4B RXRB FKBPL HLA-DMB WDR46 SLC39A7 LOC102725068 CYP21A2 HCP5 C2 CSNK2B VARS MIR6833 B3GALT4 HLA-DPA1 HLA-DQA2 AGPAT1 TAP2 HCG25 SNORD52 LTA HCG24 ZBTB22 EGFL8 AIF1 ATP6V1G2 VPS52 PFDN6 SNORD48 HLA-DOB MIR6834 ZBTB9 C2-AS1 MIR6873 DDX39B-AS1 ATF6B HSPA1A MIR1236 HLA-DPB1 MIR3135B PBX2 LY6G5B LY6G6C SNORA38
nsv1119076 Chr.6:32595823 - 33480623 on Build GRCh38 Deletion HLA-DQB2 KIFC1 TAP2 HSD17B8 HCG25 PSMB9 HCG24 TAPBP HLA-DQB1 ZBTB22 HLA-DQA1 SYNGAP1 MIR5004 VPS52 PFDN6 HLA-DQB1-AS1 PHF1 HLA-DPB2 HLA-DOA HLA-DOB MIR6834 LOC100294145 RING1 HLA-DMA PSMB8 RGL2 RXRB ZBTB9 MIR6873 COL11A2 HLA-DMB CUTA WDR46 DAXX SLC39A7 MIR219A1 TAP1 PSMB8-AS1 PPP1R2P1 BRD2 HLA-DPB1 MIR3135B B3GALT4 HLA-DPA1 HLA-DQA2 RPS18
nsv602832 Chr.6:33414464 - 33552444 on Build GRCh38 Loss SYNGAP1 MIR5004 ZBTB9 PHF1 CUTA

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