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Gene Symbol
PHF1
Assay Reference Genome
Location

Chr.6:33416073 on build GRCh38
Cytoband
6p21.32
Assay ID Hs02863781_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 5252

Gene Name:

 PHD finger protein 1

Gene Aliases:

 MTF2L2, PCL1, PHF2, TDRD19C, hPHF1

Location:

 Chr.6:33410751-33416453 on Build GRCh38

Assay Gene Location:

 Within Exon 16
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PHF1 NM_002636.4 14 1809 NP_002627.1
NM_024165.2 15 1915 NP_077084.1
NR_027692.1 15 1904
XM_011514662.1 15 1832 XP_011512964.1
XM_011514663.1 15 1829 XP_011512965.1
XM_011514664.1 14 1736 XP_011512966.1
XM_011514665.1 15 1852 XP_011512967.1
XM_011514666.1 15 1849 XP_011512968.1
XM_011514669.1 14 1642 XP_011512971.1
XM_017010939.1 13 1520 XP_016866428.1
AF029678.1 14 1629 AAC52062.1
AF052205.1 15 1731 AAC13273.1
AK225913.1 14 1917
BC008834.2 15 1883 AAH08834.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830637 Chr.6:33361588 - 33542927 on Build GRCh38 Loss ZBTB9 KIFC1 SYNGAP1 PHF1 MIR5004 CUTA
nsv830635 Chr.6:33270228 - 33446010 on Build GRCh38 Loss VPS52 SYNGAP1 PHF1 B3GALT4 MIR5004 PFDN6 CUTA RPS18 TAPBP DAXX ZBTB22 KIFC1 MIR6834 WDR46 MIR6873 RGL2
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion EHMT2 BTNL2 HLA-DRB6 HLA-DRB5 CUTA RPS18 GPANK1 HLA-DPB2 ATP6V1G2-DDX39B HLA-DPB1 MIR6832 HSD17B8 NCR3 ZBTB12 CYP21A2 LY6G5B MIR4646 LY6G6F NELFE RXRB ZBTB9 C2-AS1 STK19 RNF5 VWA7 SLC44A4 PSMB9 LTA C6orf47 PPP1R2P1 HLA-DRB1 MIR6721 HLA-DPA1 EGFL8 SNORD48 NEU1 HLA-DQA2 TNXB CSNK2B TNF LY6G6D HSPA1A RING1 NFKBIL1 PPT2-EGFL8 CYP21A1P LY6G6C WDR46 BRD2 HCG24 HLA-DQB1 PPT2 SYNGAP1 MIR3135B DXO CFB TAP2 ATF6B SKIV2L HSPA1L HLA-DMA AIF1 HCP5 TAP1 SNORD84 HLA-DRA HLA-DOB HLA-DQB1-AS1 PBX2 LTB MCCD1 HLA-DMB SAPCD1 SNORD52 C6orf10 LOC102725068 PRRT1 DDX39B DAXX KIFC1 LY6G5C DDAH2 LOC100287329 SNORA38 HLA-DOA GPSM3 MIR219A1 LSM2 RGL2 HCG25 LY6G6E C4B PRRC2A MIR1236 PSMB8-AS1 PHF1 SAPCD1-AS1 C6orf25 PFDN6 HLA-DQB2 VARS ABHD16A C4A APOM TAPBP CLIC1 ZBTB22 SNORD117 MIR6834 C2 HCG26 NOTCH4 VPS52 ATP6V1G2 B3GALT4 LOC100294145 SLC39A7 PSMB8 TNXA BAG6 HSPA1B LST1 MIR6833 DDX39B-AS1 C6orf48 COL11A2 MSH5-SAPCD1 MICB AGER MSH5 MIR5004 AGPAT1 LOC101929163 FKBPL HLA-DQA1 HCG23 LOC100507547 MIR6873
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion EHMT2 BTNL2 HLA-DRB6 HLA-DRB5 CUTA RPS18 GPANK1 HLA-DPB2 ATP6V1G2-DDX39B HLA-DPB1 MIR6832 HSD17B8 NCR3 ZBTB12 CYP21A2 LY6G5B MIR4646 LY6G6F NELFE RXRB ZBTB9 C2-AS1 STK19 RNF5 VWA7 SLC44A4 PSMB9 LTA C6orf47 PPP1R2P1 HLA-DRB1 MIR6721 HLA-DPA1 EGFL8 SNORD48 NEU1 HLA-DQA2 TNXB CSNK2B TNF LY6G6D HSPA1A RING1 NFKBIL1 PPT2-EGFL8 CYP21A1P LY6G6C WDR46 BRD2 HCG24 HLA-DQB1 PPT2 SYNGAP1 MIR3135B DXO CFB TAP2 ATF6B SKIV2L HSPA1L HLA-DMA AIF1 HCP5 TAP1 SNORD84 HLA-DRA HLA-DOB HLA-DQB1-AS1 PBX2 LTB MCCD1 HLA-DMB SAPCD1 SNORD52 C6orf10 LOC102725068 PRRT1 DDX39B DAXX KIFC1 LY6G5C DDAH2 LOC100287329 SNORA38 HLA-DOA GPSM3 MIR219A1 LSM2 RGL2 HCG25 LY6G6E C4B PRRC2A MIR1236 PSMB8-AS1 PHF1 SAPCD1-AS1 C6orf25 PFDN6 HLA-DQB2 VARS ABHD16A C4A APOM TAPBP CLIC1 ZBTB22 SNORD117 MIR6834 C2 HCG26 NOTCH4 VPS52 ATP6V1G2 B3GALT4 LOC100294145 SLC39A7 PSMB8 TNXA BAG6 HSPA1B LST1 MIR6833 DDX39B-AS1 C6orf48 COL11A2 MSH5-SAPCD1 MICB AGER MSH5 MIR5004 AGPAT1 LOC101929163 FKBPL HLA-DQA1 HCG23 LOC100507547 MIR6873
nsv602832 Chr.6:33414464 - 33552444 on Build GRCh38 Loss ZBTB9 SYNGAP1 PHF1 MIR5004 CUTA
nsv1119076 Chr.6:32595823 - 33480623 on Build GRCh38 Deletion VPS52 HLA-DQA2 HLA-DMB B3GALT4 CUTA LOC100294145 RPS18 SLC39A7 RING1 PSMB8 HLA-DPB2 DAXX KIFC1 HLA-DPB1 WDR46 HSD17B8 BRD2 HLA-DOA MIR219A1 RGL2 COL11A2 HCG24 HCG25 RXRB ZBTB9 HLA-DQB1 PSMB8-AS1 SYNGAP1 PHF1 MIR5004 MIR3135B PFDN6 HLA-DQB2 TAP2 PSMB9 HLA-DMA TAPBP ZBTB22 TAP1 HLA-DQA1 MIR6834 PPP1R2P1 HLA-DOB MIR6873 HLA-DPA1 HLA-DQB1-AS1

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