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See other CPSF3L CNV Assays ›
Gene Symbol
CPSF3L
Assay Reference Genome
Location

Chr.1:1315514 on build GRCh38
Cytoband
1p36.33
Assay ID Hs02883229_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 54973

Gene Name:

 cleavage and polyadenylation specific factor 3-like

Gene Aliases:

 CPSF73L, INT11, INTS11, RC-68, RC68

Location:

 Chr.1:1311585-1324687 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 7 - Exon 7
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CPSF3L NM_001256456.1 NP_001243385.1
NM_001256460.1 NP_001243389.1
NM_001256462.1 NP_001243391.1
NM_001256463.1 NP_001243392.1
NM_017871.5 NP_060341.2
XM_011541647.1 XP_011539949.1
XM_011541648.1 XP_011539950.1
XM_011541650.1 XP_011539952.1
XM_017001557.1 XP_016857046.1
XM_017001558.1 XP_016857047.1
AK021939.1 BAB13943.1
AK023356.1 BAB14541.1
AK056652.1
AK058018.1
AK092190.1
AK291387.1
AK297350.1
AL136813.1 CAB66747.1
BC000675.2 AAH00675.2
BC007978.2 AAH07978.1
BC008041.2 AAH08041.1
BC013904.2 AAH13904.2
BC020199.1 AAH20199.1
CR533557.1 CAG38588.1
DC299237.1
DC299993.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC105378947 ATAD3A LOC100129534 MIR6727 OR4F16 MIR6726 LOC148413 TMEM240 LOC101928626 LOC100133331 LOC102725121 TTLL10 MTND1P23 MIR200A GNB1 TNFRSF4 FAAP20 LOC100132287 ANKRD65 SAMD11 MTND2P28 UBE2J2 CDK11A LINC01342 PRKCZ CALML6 NOC2L MORN1 OR4F29 NADK MXRA8 LOC105378949 TMEM52 PERM1 AGRN MIR6859-1 ATAD3B SDF4 LOC284600 LOC105378592 B3GALT6 ISG15 C1orf159 MIR6723 HES4 DVL1 FAM87B MIR200B LOC105378948 LOC100288175 SLC35E2B LOC105378591 LOC102724312 KLHL17 SKI GABRD LOC105378589 SCNN1D FAM41C MIR6808 CPSF3L DDX11L1 LOC100506504 TAS1R3 ACAP3 MMP23A MMP23B PUSL1 MIR429 LINC00115 SSU72 CDK11B CCNL2 RNF223 TTLL10-AS1 LOC100130417 CFAP74 MRPL20 WASH7P LOC107985729 MIR6859-2 VWA1 LOC100288069 TNFRSF18 FAM138A LOC100134822 SLC35E2 LOC107985728 ATAD3C LOC107984841 FAM132A LINC01128 TMEM88B OR4F5 FNDC10 LOC729737 MIR1302-2 LOC100287934 CPTP MIB2 AURKAIP1 PLEKHN1
nsv544971 Chr.1:1294063 - 1351426 on Build GRCh38 Loss TAS1R3 ACAP3 DVL1 CPTP MIR6727 PUSL1 MIR6726 MIR6808 CPSF3L
nsv544969 Chr.1:1290683 - 1374597 on Build GRCh38 Loss TAS1R3 ACAP3 DVL1 MXRA8 CPTP MIR6727 PUSL1 MIR6726 SCNN1D MIR6808 CPSF3L AURKAIP1
dgv7n100 Chr.1:1306835 - 1379057 on Build GRCh38 Loss TAS1R3 ACAP3 DVL1 MXRA8 CPTP MIR6727 PUSL1 MIR6808 CPSF3L AURKAIP1
nsv470680 Chr.1:1070426 - 1378635 on Build GRCh38 Loss MIR6727 MIR6726 FAM132A SCNN1D MIR6808 CPSF3L TAS1R3 ACAP3 MXRA8 PUSL1 MIR429 TTLL10 MIR200A SDF4 RNF223 CPTP B3GALT6 TTLL10-AS1 C1orf159 TNFRSF4 AURKAIP1 UBE2J2 DVL1 MIR200B LINC01342 TNFRSF18
dgv6n100 Chr.1:1301750 - 1362354 on Build GRCh38 Gain+Loss TAS1R3 ACAP3 DVL1 MXRA8 CPTP MIR6727 PUSL1 MIR6808 CPSF3L
esv3584992 Chr.1:1314419 - 1330342 on Build GRCh38 Gain CPTP CPSF3L
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication MIR6727 MIR6726 FAM132A SCNN1D CPSF3L TAS1R3 ACAP3 PUSL1 MIR429 AGRN TTLL10 MIR200A SDF4 RNF223 CPTP B3GALT6 TTLL10-AS1 C1orf159 TNFRSF4 UBE2J2 MIR200B LINC01342 LOC105378948 TNFRSF18 LOC100288175
nsv1160788 Chr.1:1282706 - 1376336 on Build GRCh38 Deletion TAS1R3 ACAP3 DVL1 MXRA8 CPTP MIR6727 PUSL1 MIR6726 SCNN1D MIR6808 CPSF3L AURKAIP1
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss SLC35E2B ATAD3A LOC102724312 KLHL17 MIR6727 MIR6726 SCNN1D FAM41C MIR6808 LOC148413 TMEM240 CPSF3L TAS1R3 ACAP3 MMP23A MMP23B PUSL1 MIR429 LINC00115 SSU72 TTLL10 MIR200A CDK11B CCNL2 RNF223 TTLL10-AS1 LOC100130417 TNFRSF4 ANKRD65 MRPL20 SAMD11 LOC107985729 UBE2J2 CDK11A LINC01342 VWA1 LOC100288069 TNFRSF18 SLC35E2 LOC107985728 ATAD3C NOC2L FAM132A LINC01128 TMEM88B NADK MXRA8 PERM1 AGRN ATAD3B FNDC10 SDF4 LOC284600 LOC100287934 CPTP B3GALT6 ISG15 C1orf159 MIB2 HES4 AURKAIP1 PLEKHN1 DVL1 FAM87B MIR200B LOC105378948 LOC100288175
esv3890636 Chr.1:1304555 - 1353203 on Build GRCh38 Loss TAS1R3 ACAP3 DVL1 MXRA8 CPTP MIR6727 PUSL1 MIR6808 CPSF3L
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion ATAD3A LOC102724312 MIR6727 ATAD3C MIR6726 FAM132A SCNN1D MIR6808 LOC148413 TMEM240 TMEM88B CPSF3L TAS1R3 ACAP3 MXRA8 MMP23B PUSL1 MIR429 SSU72 TTLL10 MIR200A CDK11B CCNL2 ATAD3B FNDC10 SDF4 CPTP B3GALT6 TTLL10-AS1 C1orf159 TNFRSF4 MIB2 ANKRD65 AURKAIP1 MRPL20 LOC107985729 UBE2J2 DVL1 MIR200B LINC01342 VWA1 TNFRSF18
nsv1000169 Chr.1:1281678 - 1362354 on Build GRCh38 Gain TAS1R3 ACAP3 DVL1 MXRA8 CPTP MIR6727 PUSL1 MIR6726 SCNN1D MIR6808 CPSF3L
esv2758912 Chr.1:1263940 - 1384492 on Build GRCh38 Loss CPTP MIR6727 MIR6726 SCNN1D MIR6808 CPSF3L AURKAIP1 TAS1R3 ACAP3 UBE2J2 DVL1 MXRA8 PUSL1
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain KLHL17 LOC107985728 MIR6727 NOC2L MIR6726 FAM132A SCNN1D MIR6808 LOC148413 TMEM88B CPSF3L TAS1R3 ACAP3 MXRA8 PERM1 PUSL1 MIR429 AGRN TTLL10 MIR200A CCNL2 SDF4 RNF223 LOC284600 CPTP B3GALT6 TTLL10-AS1 ISG15 C1orf159 LOC100130417 TNFRSF4 ANKRD65 HES4 AURKAIP1 MRPL20 SAMD11 PLEKHN1 UBE2J2 DVL1 MIR200B LINC01342 LOC105378948 TNFRSF18 LOC100288175
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain SDF4 MIR6727 B3GALT6 TTLL10-AS1 MIR6726 FAM132A SCNN1D TNFRSF4 CPSF3L ACAP3 UBE2J2 MIR200B PUSL1 MIR429 TTLL10 TNFRSF18 MIR200A

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

RNA processing factor

Gene Ontology Categories:

Function(s) Process(es)


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