Hs02892715_cn

• Gene Symbol: C9orf139
• Assay Reference Genome Location: Chr.9:137032015 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 401563
• Gene Name: chromosome 9 open reading frame 139
• Gene Aliases: -
• Location: Chr.9:137027464-137037770 on Build GRCh38
• Assay Gene Location: Overlaps Intron 1 - Exon 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
C9orf139	NM_207511.2			NP_997394.1
	XM_017014717.1			XP_016870206.1
	AK124899.1			BAC85986.1

Target Gene Details

• Entrez Gene ID: 2529
• Gene Name: fucosyltransferase 7
• Gene Aliases: FucT-VII
• Location: Chr.9:137030174-137032840 on Build GRCh38
• Assay Gene Location: Overlaps Intron 1 - Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FUT7	NM_004479.3			NP_004470.1
	AK313124.1
	BC074746.2			AAH74746.2
	BC086312.1			AAH86312.1
	U08112.1			AAA56869.1
	U11282.1			AAA20468.1
	X78031.1			CAA54962.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13007n54	Chr.9:136966179 - 137173890 on Build GRCh38	Loss	FUT7 LCNL1 SAPCD2 CLIC3 UAP1L1 MIR3621 TMEM210 DPP7 MAN1B1-AS1 ABCA2 GRIN1 NPDC1 MAN1B1 ENTPD2 PRR31 PTGDS C9orf139 LOC101930307 LRRC26 C9orf142
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	TPRN LCNL1 CCDC183 EXD3 SSNA1 MIR7114 CCDC183-AS1 LCN12 TOR4A C8G ENTPD8 MAN1B1 ENTPD2 FAM166A C9orf139 LOC101930307 PHPT1 FUT7 MIR4479 SAPCD2 UAP1L1 SLC34A3 NDOR1 TMEM210 NRARP NELFB GRIN1 NPDC1 PRR31 NOXA1 RNF224 FBXW5 C9orf173-AS1 ANAPC2 C9orf172 CLIC3 TMEM203 CYSRT1 DPP7 MAN1B1-AS1 ABCA2 PNPLA7 TUBB4B PTGDS MIR4292 MAMDC4 NSMF MIR3621 STPG3 RNF208 EDF1 TRAF2 RABL6 LRRC26 C9orf142
nsv951206	Chr.9:136944849 - 137114548 on Build GRCh38	Deletion	FUT7 LCNL1 SAPCD2 CLIC3 UAP1L1 DPP7 MAN1B1-AS1 ABCA2 LCN12 C8G NPDC1 MAN1B1 ENTPD2 PRR31 PTGDS C9orf139 LOC101930307 C9orf142
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	LINC01451 LCNL1 C9orf163 CCDC183 EGFL7 LCN6 CCDC183-AS1 SNORA17A LCN12 C8G MAN1B1 ENTPD2 C9orf139 MIR6722 LOC101930307 CARD9 PHPT1 FUT7 MIR4479 SAPCD2 UAP1L1 SEC16A INPP5E TMEM210 SNHG7 LCN15 TMEM141 NOTCH1 MIR4674 GRIN1 NPDC1 PRR31 LCN10 MIR4673 FBXW5 NALT1 C9orf172 CLIC3 DNLZ DPP7 MAN1B1-AS1 ABCA2 PTGDS MIR4292 SDCCAG3 AGPAT2 HSPC324 FAM69B SNORA17B MAMDC4 LOC100128593 SNAPC4 MIR3621 PMPCA LCN8 EDF1 TRAF2 MIR126 RABL6 LRRC26 C9orf142
esv2761561	Chr.9:137030185 - 137191593 on Build GRCh38	Gain	FUT7 ANAPC2 SAPCD2 UAP1L1 MIR3621 TMEM210 DPP7 SSNA1 MAN1B1-AS1 GRIN1 NPDC1 MAN1B1 ENTPD2 C9orf139 LOC101930307 LRRC26
nsv616004	Chr.9:137014976 - 137053021 on Build GRCh38	Loss	FUT7 ABCA2 NPDC1 ENTPD2 C9orf139
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	TPRN LINC01451 LCNL1 CCDC183 EGFL7 EXD3 LCN6 SSNA1 CCDC183-AS1 SNORA17A LCN12 TOR4A C8G MAN1B1 ENTPD2 FAM166A C9orf139 MIR6722 LOC101930307 PHPT1 FUT7 MIR4479 SAPCD2 UAP1L1 SLC34A3 NDOR1 TMEM210 SNHG7 LCN15 TMEM141 NRARP NELFB GRIN1 NPDC1 PRR31 LCN10 RNF224 FBXW5 C9orf173-AS1 ANAPC2 C9orf172 CLIC3 TMEM203 CYSRT1 DPP7 MAN1B1-AS1 ABCA2 TUBB4B PTGDS MIR4292 AGPAT2 HSPC324 FAM69B SNORA17B MAMDC4 LOC100128593 MIR3621 STPG3 LCN8 RNF208 EDF1 TRAF2 MIR126 RABL6 LRRC26 C9orf142

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

glycosyltransferase

Gene Ontology Categories:

Process(es)

CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation
leukocyte migration involved in immune response
protein glycosylation
protein N-linked glycosylation
fucosylation
L-fucose catabolic process

Function(s)

fucosyltransferase activity
alpha-(1->3)-fucosyltransferase activity