Hs02913040_cn

• Gene Symbol: PCDHA1
• Assay Reference Genome Location: Chr.5:140848142 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56147
• Gene Name: protocadherin alpha 1
• Gene Aliases: PCDH-ALPHA1
• Location: Chr.5:140786136-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA1	NM_018900.3			NP_061723.1
	NM_031411.2			NP_113599.1
	AF152305.1			AAD43699.1
	AF169695.1			AAF89692.1

Target Gene Details

• Entrez Gene ID: 56146
• Gene Name: protocadherin alpha 2
• Gene Aliases: PCDH-ALPHA2
• Location: Chr.5:140794859-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA2	NM_018905.2			NP_061728.1
	AF152310.1			AAD43704.1

Target Gene Details

• Entrez Gene ID: 56145
• Gene Name: protocadherin alpha 3
• Gene Aliases: PCDH-ALPHA3
• Location: Chr.5:140801198-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA3	NM_018906.2			NP_061729.1
	AF152311.1			AAD43705.1

Target Gene Details

• Entrez Gene ID: 56144
• Gene Name: protocadherin alpha 4
• Gene Aliases: CNR1, CNRN1, CRNR1, PCDH-ALPHA4
• Location: Chr.5:140807074-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA4	NM_018907.3			NP_061730.1
	AB208925.1			BAD92162.1
	AF152312.1			AAD43706.1

Target Gene Details

• Entrez Gene ID: 56143
• Gene Name: protocadherin alpha 5
• Gene Aliases: CNR6, CNRN6, CNRS6, CRNR6, PCDH-ALPHA5
• Location: Chr.5:140821776-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA5	NM_018908.2			NP_061731.1
	AB208863.1			BAD92100.1
	AF152313.1			AAD43707.1
	BC033735.1			AAH33735.1

Target Gene Details

• Entrez Gene ID: 56142
• Gene Name: protocadherin alpha 6
• Gene Aliases: CNR2, CNRN2, CNRS2, CRNR2, PCDH-ALPHA6
• Location: Chr.5:140827922-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA6	NM_018909.3			NP_061732.1
	NM_031849.2			NP_114037.1
	AB209205.1			BAD92442.1
	AF152314.1			AAD43708.1
	AF169694.1			AAF89691.1
	BC036674.2			AAH36674.1

Target Gene Details

• Entrez Gene ID: 56141
• Gene Name: protocadherin alpha 7
• Gene Aliases: CNR4, CNRN4, CNRS4, CRNR4, PCDH-ALPHA7
• Location: Chr.5:140834384-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA7	NM_018910.2			NP_061733.1
	AF152315.1			AAD43709.1

Target Gene Details

• Entrez Gene ID: 56140
• Gene Name: protocadherin alpha 8
• Gene Aliases: PCDH-ALPHA8
• Location: Chr.5:140841322-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA8	NM_018911.2			NP_061734.1
	AF152316.1			AAD43710.1

Target Gene Details

• Entrez Gene ID: 9752
• Gene Name: protocadherin alpha 9
• Gene Aliases: PCDH-ALPHA9
• Location: Chr.5:140847772-141012344 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA9	NM_014005.4	1	371	NP_054724.1
	NM_031857.1	1	371	NP_114063.1
	AB002343.1	1	371
	AJ007610.1	1	680	CAC22257.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv964953	Chr.5:140848155 - 140850849 on Build GRCh38	Duplication	PCDHA7 PCDHA9 PCDHA4 PCDHA1 PCDHA5 PCDHA8 PCDHA6 PCDHA3 PCDHA2
nsv599839	Chr.5:140837299 - 140848579 on Build GRCh38	Gain	PCDHA7 PCDHA9 PCDHA4 PCDHA1 PCDHA5 PCDHA8 PCDHA6 PCDHA3 PCDHA2
nsv819207	Chr.5:140842721 - 140859461 on Build GRCh38	Gain	PCDHA7 PCDHA9 PCDHA4 PCDHA1 PCDHA10 PCDHA5 PCDHA8 PCDHA6 PCDHA3 PCDHA2
esv33939	Chr.5:140837491 - 140859238 on Build GRCh38	Gain+Loss	PCDHA7 PCDHA9 PCDHA4 PCDHA1 PCDHA10 PCDHA5 PCDHA8 PCDHA6 PCDHA3 PCDHA2
dgv1651e212	Chr.5:140838196 - 140852242 on Build GRCh38	Loss	PCDHA7 PCDHA9 PCDHA4 PCDHA1 PCDHA5 PCDHA8 PCDHA6 PCDHA3 PCDHA2
nsv10753	Chr.5:140842575 - 140859579 on Build GRCh38	Gain	PCDHA7 PCDHA9 PCDHA4 PCDHA1 PCDHA10 PCDHA5 PCDHA8 PCDHA6 PCDHA3 PCDHA2
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHB6 PCDHAC2 PCDHB4 PCDHA8 PCDHGB5 PCDHGA5 PCDHGA3 PCDHGB6 PCDHB1 PCDHGB8P PCDHGA8 PCDHA1 PCDHA10 TAF7 PCDHB9 PCDHB8 PCDHA2 PCDHB11 PCDHB3 PCDHGB4 PCDHB5 PCDHA7 PCDHB12 PCDHGB1 PCDHB2 PCDHGA6 PCDHA9 PCDHGB7 PCDHGA7 PCDHA4 PCDHGA12 PCDHGA10 PCDHB10 PCDHB16 PCDHGA1 PCDHGA11 PCDHGA2 PCDHA13 PCDHB7 PCDHA5 PCDHB13 PCDHA3 PCDHB18P PCDHGA4 PCDHB17P PCDHA11 PCDHB15 PCDHA12 PCDHGA9 PCDHB19P PCDHAC1 PCDHGB3 PCDHGB2 PCDHB14 LOC101926905 PCDHA6 SLC25A2
dgv138e203	Chr.5:140838209 - 140874533 on Build GRCh38	Loss	PCDHA7 PCDHA9 PCDHA11 PCDHA4 PCDHA1 PCDHA10 PCDHA5 PCDHA8 PCDHA6 PCDHA3 PCDHA2
dgv1653e212	Chr.5:140839141 - 140874132 on Build GRCh38	Loss	PCDHA7 PCDHA9 PCDHA11 PCDHA4 PCDHA1 PCDHA10 PCDHA5 PCDHA8 PCDHA6 PCDHA3 PCDHA2
nsv1133616	Chr.5:140842215 - 140848715 on Build GRCh38	Deletion	PCDHA7 PCDHA9 PCDHA4 PCDHA1 PCDHA5 PCDHA8 PCDHA6 PCDHA3 PCDHA2
esv3606958	Chr.5:140842689 - 140859762 on Build GRCh38	Loss	PCDHA7 PCDHA9 PCDHA4 PCDHA1 PCDHA10 PCDHA5 PCDHA8 PCDHA6 PCDHA3 PCDHA2
nsv442962	Chr.5:140844251 - 140864171 on Build GRCh38	Loss	PCDHA7 PCDHA9 PCDHA4 PCDHA1 PCDHA10 PCDHA5 PCDHA8 PCDHA6 PCDHA3 PCDHA2
esv3566721	Chr.5:140840563 - 140861415 on Build GRCh38	Deletion	PCDHA7 PCDHA9 PCDHA4 PCDHA1 PCDHA10 PCDHA5 PCDHA8 PCDHA6 PCDHA3 PCDHA2
nsv514324	Chr.5:140844231 - 140859031 on Build GRCh38	Loss	PCDHA7 PCDHA9 PCDHA4 PCDHA1 PCDHA10 PCDHA5 PCDHA8 PCDHA6 PCDHA3 PCDHA2
dgv971n67	Chr.5:140842564 - 140859431 on Build GRCh38	Loss	PCDHA7 PCDHA9 PCDHA4 PCDHA1 PCDHA10 PCDHA5 PCDHA8 PCDHA6 PCDHA3 PCDHA2
dgv724n27	Chr.5:140847633 - 140852761 on Build GRCh38	Loss	PCDHA7 PCDHA9 PCDHA4 PCDHA1 PCDHA5 PCDHA8 PCDHA6 PCDHA3 PCDHA2
nsv1024237	Chr.5:140810775 - 140852242 on Build GRCh38	Loss	PCDHA7 PCDHA9 PCDHA4 PCDHA1 PCDHA5 PCDHA8 PCDHA6 PCDHA3 PCDHA2
dgv1043e199	Chr.5:140842260 - 140861207 on Build GRCh38	Deletion	PCDHA7 PCDHA9 PCDHA4 PCDHA1 PCDHA10 PCDHA5 PCDHA8 PCDHA6 PCDHA3 PCDHA2
dgv3182n106	Chr.5:140842552 - 140859353 on Build GRCh38	Deletion	PCDHA7 PCDHA9 PCDHA4 PCDHA1 PCDHA10 PCDHA5 PCDHA8 PCDHA6 PCDHA3 PCDHA2
esv2730839	Chr.5:140842540 - 140859393 on Build GRCh38	Deletion	PCDHA7 PCDHA9 PCDHA4 PCDHA1 PCDHA10 PCDHA5 PCDHA8 PCDHA6 PCDHA3 PCDHA2
nsv830508	Chr.5:140675388 - 140869073 on Build GRCh38	Loss	ZMAT2 PCDHA7 VTRNA1-2 PCDHA11 PCDHA8 VTRNA1-1 PCDHA9 PCDHA4 HARS PCDHA1 PCDHA10 PCDHA5 PCDHA6 PCDHA3 PCDHA2 VTRNA1-3 HARS2
esv2861013	Chr.5:140834461 - 140848573 on Build GRCh38	Duplication	PCDHA7 PCDHA9 PCDHA4 PCDHA1 PCDHA5 PCDHA8 PCDHA6 PCDHA3 PCDHA2
nsv599841	Chr.5:140841349 - 140856513 on Build GRCh38	Loss	PCDHA7 PCDHA9 PCDHA4 PCDHA1 PCDHA10 PCDHA5 PCDHA8 PCDHA6 PCDHA3 PCDHA2
dgv10094n54	Chr.5:140846323 - 140860465 on Build GRCh38	Loss	PCDHA7 PCDHA9 PCDHA4 PCDHA1 PCDHA10 PCDHA5 PCDHA8 PCDHA6 PCDHA3 PCDHA2
dgv10092n54	Chr.5:140835344 - 140850785 on Build GRCh38	Loss	PCDHA7 PCDHA9 PCDHA4 PCDHA1 PCDHA5 PCDHA8 PCDHA6 PCDHA3 PCDHA2
esv29977	Chr.5:140843471 - 140856955 on Build GRCh38	Gain	PCDHA7 PCDHA9 PCDHA4 PCDHA1 PCDHA10 PCDHA5 PCDHA8 PCDHA6 PCDHA3 PCDHA2
dgv1044e199	Chr.5:140843360 - 140849907 on Build GRCh38	Deletion	PCDHA7 PCDHA9 PCDHA4 PCDHA1 PCDHA5 PCDHA8 PCDHA6 PCDHA3 PCDHA2

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
nervous system development

Function(s)

calcium ion binding
protein binding