Hs02913040_cn

• Gene Symbol: PCDHA1
• Assay Reference Genome Location: Chr.5:140848142 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56147
• Gene Name: protocadherin alpha 1
• Gene Aliases: PCDH-ALPHA1
• Location: Chr.5:140786136-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA1	NM_018900.3			NP_061723.1
	NM_031411.2			NP_113599.1
	AF152305.1			AAD43699.1
	AF169695.1			AAF89692.1

Target Gene Details

• Entrez Gene ID: 56146
• Gene Name: protocadherin alpha 2
• Gene Aliases: PCDH-ALPHA2
• Location: Chr.5:140794859-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA2	NM_018905.2			NP_061728.1
	AF152310.1			AAD43704.1

Target Gene Details

• Entrez Gene ID: 56145
• Gene Name: protocadherin alpha 3
• Gene Aliases: PCDH-ALPHA3
• Location: Chr.5:140801198-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA3	NM_018906.2			NP_061729.1
	AF152311.1			AAD43705.1

Target Gene Details

• Entrez Gene ID: 56144
• Gene Name: protocadherin alpha 4
• Gene Aliases: CNR1, CNRN1, CRNR1, PCDH-ALPHA4
• Location: Chr.5:140807074-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA4	NM_018907.3			NP_061730.1
	AB208925.1			BAD92162.1
	AF152312.1			AAD43706.1

Target Gene Details

• Entrez Gene ID: 56143
• Gene Name: protocadherin alpha 5
• Gene Aliases: CNR6, CNRN6, CNRS6, CRNR6, PCDH-ALPHA5
• Location: Chr.5:140821776-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA5	NM_018908.2			NP_061731.1
	AB208863.1			BAD92100.1
	AF152313.1			AAD43707.1
	BC033735.1			AAH33735.1

Target Gene Details

• Entrez Gene ID: 56142
• Gene Name: protocadherin alpha 6
• Gene Aliases: CNR2, CNRN2, CNRS2, CRNR2, PCDH-ALPHA6
• Location: Chr.5:140827922-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA6	NM_018909.3			NP_061732.1
	NM_031849.2			NP_114037.1
	AB209205.1			BAD92442.1
	AF152314.1			AAD43708.1
	AF169694.1			AAF89691.1
	BC036674.2			AAH36674.1

Target Gene Details

• Entrez Gene ID: 56141
• Gene Name: protocadherin alpha 7
• Gene Aliases: CNR4, CNRN4, CNRS4, CRNR4, PCDH-ALPHA7
• Location: Chr.5:140834384-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA7	NM_018910.2			NP_061733.1
	AF152315.1			AAD43709.1

Target Gene Details

• Entrez Gene ID: 56140
• Gene Name: protocadherin alpha 8
• Gene Aliases: PCDH-ALPHA8
• Location: Chr.5:140841322-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA8	NM_018911.2			NP_061734.1
	AF152316.1			AAD43710.1

Target Gene Details

• Entrez Gene ID: 9752
• Gene Name: protocadherin alpha 9
• Gene Aliases: PCDH-ALPHA9
• Location: Chr.5:140847772-141012344 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA9	NM_014005.4	1	371	NP_054724.1
	NM_031857.1	1	371	NP_114063.1
	AB002343.1	1	371
	AJ007610.1	1	680	CAC22257.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv964953	Chr.5:140848155 - 140850849 on Build GRCh38	Duplication	PCDHA3 PCDHA6 PCDHA9 PCDHA5 PCDHA2 PCDHA1 PCDHA8 PCDHA4 PCDHA7
nsv599839	Chr.5:140837299 - 140848579 on Build GRCh38	Gain	PCDHA3 PCDHA6 PCDHA9 PCDHA5 PCDHA2 PCDHA1 PCDHA8 PCDHA4 PCDHA7
nsv819207	Chr.5:140842721 - 140859461 on Build GRCh38	Gain	PCDHA3 PCDHA6 PCDHA9 PCDHA5 PCDHA10 PCDHA2 PCDHA1 PCDHA8 PCDHA4 PCDHA7
dgv1651e212	Chr.5:140838196 - 140852242 on Build GRCh38	Loss	PCDHA3 PCDHA6 PCDHA9 PCDHA5 PCDHA2 PCDHA1 PCDHA8 PCDHA4 PCDHA7
esv33939	Chr.5:140837491 - 140859238 on Build GRCh38	Gain+Loss	PCDHA3 PCDHA6 PCDHA9 PCDHA5 PCDHA10 PCDHA2 PCDHA1 PCDHA8 PCDHA4 PCDHA7
nsv10753	Chr.5:140842575 - 140859579 on Build GRCh38	Gain	PCDHA3 PCDHA6 PCDHA9 PCDHA5 PCDHA10 PCDHA2 PCDHA1 PCDHA8 PCDHA4 PCDHA7
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHGA8 PCDHGA12 PCDHGA1 PCDHGA10 PCDHA13 PCDHAC1 PCDHB10 PCDHGB5 PCDHB4 PCDHGA3 PCDHB16 PCDHA10 PCDHA2 PCDHB18P PCDHA7 PCDHA3 PCDHA6 PCDHB2 PCDHGA9 PCDHA4 PCDHGA2 PCDHB17P PCDHA1 PCDHB3 PCDHB15 PCDHB5 PCDHAC2 PCDHA8 PCDHB12 PCDHB13 PCDHGA5 PCDHGB8P LOC101926905 PCDHGB7 PCDHB8 PCDHB19P PCDHA11 PCDHGB1 PCDHB9 SLC25A2 PCDHGB4 PCDHB11 PCDHGA4 PCDHGB3 PCDHGA6 PCDHB14 PCDHGA7 PCDHB6 PCDHGB6 TAF7 PCDHA9 PCDHGA11 PCDHA5 PCDHA12 PCDHB7 PCDHB1 PCDHGB2
dgv1652e212	Chr.5:140839141 - 140864158 on Build GRCh38	Loss	PCDHA3 PCDHA6 PCDHA9 PCDHA5 PCDHA10 PCDHA2 PCDHA1 PCDHA8 PCDHA4 PCDHA7
dgv138e203	Chr.5:140838209 - 140874533 on Build GRCh38	Loss	PCDHA3 PCDHA6 PCDHA9 PCDHA5 PCDHA10 PCDHA2 PCDHA1 PCDHA8 PCDHA4 PCDHA7 PCDHA11
nsv1133616	Chr.5:140842215 - 140848715 on Build GRCh38	Deletion	PCDHA3 PCDHA6 PCDHA9 PCDHA5 PCDHA2 PCDHA1 PCDHA8 PCDHA4 PCDHA7
esv3606958	Chr.5:140842689 - 140859762 on Build GRCh38	Loss	PCDHA3 PCDHA6 PCDHA9 PCDHA5 PCDHA10 PCDHA2 PCDHA1 PCDHA8 PCDHA4 PCDHA7
esv2421858	Chr.5:140844251 - 140857963 on Build GRCh38	Deletion	PCDHA3 PCDHA6 PCDHA9 PCDHA5 PCDHA10 PCDHA2 PCDHA1 PCDHA8 PCDHA4 PCDHA7
esv3566721	Chr.5:140840563 - 140861415 on Build GRCh38	Deletion	PCDHA3 PCDHA6 PCDHA9 PCDHA5 PCDHA10 PCDHA2 PCDHA1 PCDHA8 PCDHA4 PCDHA7
nsv514324	Chr.5:140844231 - 140859031 on Build GRCh38	Loss	PCDHA3 PCDHA6 PCDHA9 PCDHA5 PCDHA10 PCDHA2 PCDHA1 PCDHA8 PCDHA4 PCDHA7
dgv10096n54	Chr.5:140847633 - 140852761 on Build GRCh38	Loss	PCDHA3 PCDHA6 PCDHA9 PCDHA5 PCDHA2 PCDHA1 PCDHA8 PCDHA4 PCDHA7
esv26168	Chr.5:140842564 - 140859300 on Build GRCh38	Gain	PCDHA3 PCDHA6 PCDHA9 PCDHA5 PCDHA10 PCDHA2 PCDHA1 PCDHA8 PCDHA4 PCDHA7
dgv3182n106	Chr.5:140842552 - 140859353 on Build GRCh38	Deletion	PCDHA3 PCDHA6 PCDHA9 PCDHA5 PCDHA10 PCDHA2 PCDHA1 PCDHA8 PCDHA4 PCDHA7
dgv1043e199	Chr.5:140842260 - 140861207 on Build GRCh38	Deletion	PCDHA3 PCDHA6 PCDHA9 PCDHA5 PCDHA10 PCDHA2 PCDHA1 PCDHA8 PCDHA4 PCDHA7
nsv1024237	Chr.5:140810775 - 140852242 on Build GRCh38	Loss	PCDHA3 PCDHA6 PCDHA9 PCDHA5 PCDHA2 PCDHA1 PCDHA8 PCDHA4 PCDHA7
esv2730839	Chr.5:140842540 - 140859393 on Build GRCh38	Deletion	PCDHA3 PCDHA6 PCDHA9 PCDHA5 PCDHA10 PCDHA2 PCDHA1 PCDHA8 PCDHA4 PCDHA7
nsv830508	Chr.5:140675388 - 140869073 on Build GRCh38	Loss	ZMAT2 PCDHA3 PCDHA6 VTRNA1-2 VTRNA1-1 PCDHA8 PCDHA4 VTRNA1-3 PCDHA9 PCDHA5 PCDHA10 PCDHA2 PCDHA1 PCDHA7 HARS PCDHA11 HARS2
nsv599841	Chr.5:140841349 - 140856513 on Build GRCh38	Loss	PCDHA3 PCDHA6 PCDHA9 PCDHA5 PCDHA10 PCDHA2 PCDHA1 PCDHA8 PCDHA4 PCDHA7
esv2861013	Chr.5:140834461 - 140848573 on Build GRCh38	Duplication	PCDHA3 PCDHA6 PCDHA9 PCDHA5 PCDHA2 PCDHA1 PCDHA8 PCDHA4 PCDHA7
esv3890744	Chr.5:140846323 - 140857963 on Build GRCh38	Loss	PCDHA3 PCDHA6 PCDHA9 PCDHA5 PCDHA10 PCDHA2 PCDHA1 PCDHA8 PCDHA4 PCDHA7
dgv10092n54	Chr.5:140835344 - 140850785 on Build GRCh38	Loss	PCDHA3 PCDHA6 PCDHA9 PCDHA5 PCDHA2 PCDHA1 PCDHA8 PCDHA4 PCDHA7
esv29977	Chr.5:140843471 - 140856955 on Build GRCh38	Gain	PCDHA3 PCDHA6 PCDHA9 PCDHA5 PCDHA10 PCDHA2 PCDHA1 PCDHA8 PCDHA4 PCDHA7
dgv1044e199	Chr.5:140843360 - 140849907 on Build GRCh38	Deletion	PCDHA3 PCDHA6 PCDHA9 PCDHA5 PCDHA2 PCDHA1 PCDHA8 PCDHA4 PCDHA7

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
nervous system development

Function(s)

calcium ion binding
protein binding