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See other TNFRSF4 CNV Assays ›
Gene Symbol
TNFRSF4
Assay Reference Genome
Location

Chr.1:1213630 on build GRCh38
Cytoband
1p36.33
Assay ID Hs02918742_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 7293

Gene Name:

 TNF receptor superfamily member 4

Gene Aliases:

 ACT35, CD134, IMD16, OX40, TXGP1L

Location:

 Chr.1:1211326-1216812 on Build GRCh38

Assay Gene Location:

 Within Exon 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TNFRSF4 NM_003327.3 NP_003318.1
XM_011542074.2 1 127 XP_011540376.1
XM_011542075.2 XP_011540377.1
XM_011542076.2 1 127 XP_011540378.1
XM_017002231.1 XP_016857720.1
XM_017002232.1 XP_016857721.1
BC105070.1 AAI05071.1
BC105072.1 AAI05073.1
S76792.1 AAB33944.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss MXRA8 MIR6859-1 MIR429 MRPL20 DVL1 MIR6726 AURKAIP1 LOC100134822 GNB1 TMEM240 LOC100132287 TMEM52 ATAD3B LOC100288069 UBE2J2 ACAP3 MMP23B TNFRSF4 LOC105378592 LOC107984841 ATAD3C LOC105378948 FAM87B LOC105378589 ISG15 MTND2P28 MIR6723 PERM1 OR4F29 LOC102725121 NADK ATAD3A LINC01128 SCNN1D CFAP74 SLC35E2B MIR6859-2 FAAP20 KLHL17 MIR6808 LOC105378591 WASH7P MORN1 LOC105378947 HES4 MIR200B LOC284600 MTND1P23 LOC107985729 MMP23A FAM41C ANKRD65 LOC100129534 LOC100130417 TMEM88B LOC729737 SLC35E2 FAM138A PRKCZ CDK11A CDK11B LOC101928626 TTLL10-AS1 NOC2L MIR1302-2 LOC102724312 FAM132A LINC00115 C1orf159 RNF223 LOC100506504 LINC01342 SSU72 SDF4 CCNL2 SAMD11 LOC100133331 TAS1R3 OR4F16 CPTP LOC148413 SKI PUSL1 CALML6 LOC107985728 MIR6727 TNFRSF18 B3GALT6 LOC100287934 OR4F5 MIR200A DDX11L1 CPSF3L VWA1 TTLL10 LOC100288175 AGRN GABRD FNDC10 LOC105378949 MIB2 PLEKHN1
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain UBE2J2 C1orf159 MIR429 RNF223 SCNN1D TTLL10 MIR200B LINC01342 TNFRSF4 TTLL10-AS1 SDF4 LOC105378948 TNFRSF18 B3GALT6 FAM132A MIR200A
nsv544947 Chr.1:1070426 - 1306704 on Build GRCh38 Loss UBE2J2 C1orf159 MIR429 RNF223 SCNN1D TTLL10 ACAP3 MIR200B MIR6726 LINC01342 TNFRSF4 TTLL10-AS1 SDF4 TNFRSF18 B3GALT6 FAM132A MIR200A
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TTLL10-AS1 SDF4 TNFRSF18 B3GALT6 TTLL10 TNFRSF4
nsv544963 Chr.1:1206945 - 1214281 on Build GRCh38 Loss TNFRSF18 TNFRSF4
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain MIR429 TTLL10-AS1 LOC107985728 TNFRSF18 NOC2L KLHL17 MIR200A C1orf159 HES4 RNF223 TTLL10 MIR200B LOC100288175 LINC01342 LOC284600 AGRN FAM41C TNFRSF4 SDF4 LOC100130417 LOC105378948 ISG15 SAMD11 PERM1 PLEKHN1
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication TAS1R3 MIR429 SCNN1D CPTP MIR6726 PUSL1 TTLL10-AS1 MIR6727 TNFRSF18 B3GALT6 FAM132A MIR200A CPSF3L UBE2J2 C1orf159 RNF223 TTLL10 ACAP3 MIR200B LOC100288175 LINC01342 AGRN TNFRSF4 SDF4 LOC105378948
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss MXRA8 SLC35E2 MIR429 MRPL20 DVL1 MIR6726 CDK11A CDK11B AURKAIP1 TTLL10-AS1 NOC2L TMEM240 LOC102724312 ATAD3B FAM132A LOC100288069 LINC00115 UBE2J2 C1orf159 RNF223 ACAP3 LINC01342 MMP23B TNFRSF4 SSU72 SDF4 ATAD3C LOC105378948 FAM87B CCNL2 ISG15 SAMD11 PERM1 NADK ATAD3A TAS1R3 LINC01128 SCNN1D CPTP LOC148413 PUSL1 SLC35E2B LOC107985728 MIR6727 TNFRSF18 B3GALT6 LOC100287934 KLHL17 MIR6808 MIR200A CPSF3L VWA1 HES4 TTLL10 MIR200B LOC100288175 LOC284600 AGRN LOC107985729 MMP23A FAM41C ANKRD65 FNDC10 LOC100130417 MIB2 PLEKHN1 TMEM88B
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss MIR429 LINC01128 TTLL10-AS1 LOC107985728 TNFRSF18 B3GALT6 NOC2L KLHL17 FAM132A MIR200A LINC00115 UBE2J2 C1orf159 HES4 RNF223 TTLL10 MIR200B LOC100288175 LINC01342 LOC284600 AGRN FAM41C TNFRSF4 SDF4 LOC100130417 LOC105378948 FAM87B ISG15 SAMD11 PERM1 PLEKHN1
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion MXRA8 ATAD3A TAS1R3 MIR429 SCNN1D MRPL20 CPTP DVL1 LOC148413 MIR6726 CDK11B AURKAIP1 PUSL1 TTLL10-AS1 MIR6727 TNFRSF18 B3GALT6 TMEM240 MIR6808 LOC102724312 ATAD3B FAM132A MIR200A CPSF3L VWA1 UBE2J2 C1orf159 TTLL10 ACAP3 MIR200B LINC01342 LOC107985729 MMP23B TNFRSF4 SSU72 ANKRD65 FNDC10 SDF4 ATAD3C CCNL2 MIB2 TMEM88B
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain MXRA8 TAS1R3 MIR429 SCNN1D MRPL20 CPTP DVL1 LOC148413 MIR6726 AURKAIP1 PUSL1 TTLL10-AS1 LOC107985728 MIR6727 TNFRSF18 B3GALT6 NOC2L KLHL17 MIR6808 FAM132A MIR200A CPSF3L UBE2J2 C1orf159 HES4 RNF223 TTLL10 ACAP3 MIR200B LOC100288175 LINC01342 LOC284600 AGRN TNFRSF4 ANKRD65 SDF4 LOC100130417 LOC105378948 CCNL2 ISG15 SAMD11 PERM1 PLEKHN1 TMEM88B
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion C1orf159 MIR429 HES4 RNF223 TTLL10 MIR200B LOC100288175 LINC01342 AGRN TNFRSF4 TTLL10-AS1 SDF4 LOC105378948 TNFRSF18 ISG15 SAMD11 PERM1 NOC2L KLHL17 PLEKHN1 MIR200A
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain CPSF3L UBE2J2 MIR429 SCNN1D TTLL10 ACAP3 MIR200B MIR6726 TNFRSF4 PUSL1 TTLL10-AS1 SDF4 MIR6727 TNFRSF18 B3GALT6 FAM132A MIR200A

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