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See other FAAP20 CNV Assays ›
Gene Symbol
FAAP20
Assay Reference Genome
Location

Chr.1:2185396 on build GRCh38
Cytoband
1p36.33
Assay ID Hs02934406_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 199990

Gene Name:

 Fanconi anemia core complex associated protein 20

Gene Aliases:

 C1orf86, FP7162

Location:

 Chr.1:2184460-2212720 on Build GRCh38

Assay Gene Location:

 Within Exon 16
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
FAAP20 NM_001146310.1 8 1348 NP_001139782.1
NM_001256945.1 3 478 NP_001243874.1
NM_001282671.1 8 1429 NP_001269600.1
NM_001282672.1 7 1298 NP_001269601.1
NM_001282673.1 4 614 NP_001269602.1
XM_017000554.1 4 589 XP_016856043.1
XM_017000555.1 2 1465 XP_016856044.1
XM_017000556.1 3 877 XP_016856045.1
AF469129.1 8 1395 AAP97719.1
AK055593.1 7 1298 BAB70965.1
AK127994.1 8 1348 BAC87220.1
BG825658.1 4 595
BU192678.1 3 439

Target Gene Details

Entrez Gene ID:

 5590

Gene Name:

 protein kinase C zeta

Gene Aliases:

 PKC-ZETA, PKC2

Location:

 Chr.1:2050470-2185395 on Build GRCh38

Assay Gene Location:

 Overlaps - Exon 28
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PRKCZ NM_001033581.1 NP_001028753.1
NM_001033582.1 NP_001028754.1
NM_001242874.1 NP_001229803.1
NM_002744.4 NP_002735.3
XM_017001790.1 XP_016857279.1
XM_017001791.1 XP_016857280.1
XM_017001796.1 XP_016857285.1
XM_017001798.1 XP_016857287.1
XM_017001799.1 XP_016857288.1
XM_017001801.1 XP_016857290.1
XM_017001804.1 XP_016857293.1
XM_017001805.1 XP_016857294.1
AK097627.1
AK131526.1
BC008058.2 AAH08058.1
BC014270.2 AAH14270.1
Z15108.1 CAA78813.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv461727 Chr.1:2151050 - 2251031 on Build GRCh38 Loss FAAP20 PRKCZ LOC105378592 LOC100506504 SKI
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss SLC35E2 LOC105378949 LINC01342 LOC107985728 FAM41C FAAP20 LOC102724312 LOC100506504 CFAP74 SKI CDK11A TNFRSF18 PERM1 NADK MIR6723 LOC100133331 SDF4 OR4F16 TMEM240 FAM138A SCNN1D FNDC10 SSU72 OR4F29 MIR6808 MIR6726 UBE2J2 CCNL2 CPTP LINC01128 LOC105378947 ATAD3C LOC105378591 CDK11B LOC284600 MIR6859-2 PRKCZ LOC100132287 MMP23B ISG15 MXRA8 TTLL10-AS1 LOC107984841 HES4 GABRD WASH7P LOC100129534 LINC00115 MIR1302-2 AURKAIP1 FAM87B TTLL10 MIR200B ATAD3A GNB1 LOC148413 OR4F5 ATAD3B MIR429 LOC107985729 MORN1 TNFRSF4 LOC105378592 TAS1R3 RNF223 B3GALT6 MIR200A DDX11L1 ACAP3 LOC100288175 PLEKHN1 AGRN VWA1 MIR6727 LOC102725121 LOC100287934 SAMD11 MIB2 LOC105378589 LOC105378948 MMP23A NOC2L CALML6 C1orf159 ANKRD65 LOC729737 MTND2P28 MIR6859-1 FAM132A SLC35E2B KLHL17 LOC100130417 MTND1P23 LOC100288069 LOC100134822 CPSF3L DVL1 LOC101928626 PUSL1 MRPL20 TMEM88B TMEM52
nsv951530 Chr.1:2153662 - 2229961 on Build GRCh38 Deletion FAAP20 PRKCZ LOC105378592 LOC100506504 SKI
nsv834557 Chr.1:2117631 - 2311104 on Build GRCh38 Loss FAAP20 PRKCZ LOC105378592 LOC100506504 SKI

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More Information


Set Membership:

 Intragenic Exonic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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