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See other FAAP20 CNV Assays ›
Gene Symbol
FAAP20
Assay Reference Genome
Location

Chr.1:2185396 on build GRCh38
Cytoband
1p36.33
Assay ID Hs02934406_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 199990

Gene Name:

 Fanconi anemia core complex associated protein 20

Gene Aliases:

 C1orf86, FP7162

Location:

 Chr.1:2184460-2212720 on Build GRCh38

Assay Gene Location:

 Within Exon 16
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
FAAP20 NM_001146310.1 8 1348 NP_001139782.1
NM_001256945.1 3 478 NP_001243874.1
NM_001282671.1 8 1429 NP_001269600.1
NM_001282672.1 7 1298 NP_001269601.1
NM_001282673.1 4 614 NP_001269602.1
XM_017000554.1 4 589 XP_016856043.1
XM_017000555.1 2 1465 XP_016856044.1
XM_017000556.1 3 877 XP_016856045.1
AF469129.1 8 1395 AAP97719.1
AK055593.1 7 1298 BAB70965.1
AK127994.1 8 1348 BAC87220.1
BG825658.1 4 595
BU192678.1 3 439

Target Gene Details

Entrez Gene ID:

 5590

Gene Name:

 protein kinase C zeta

Gene Aliases:

 PKC-ZETA, PKC2

Location:

 Chr.1:2050470-2185395 on Build GRCh38

Assay Gene Location:

 Overlaps - Exon 28
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PRKCZ NM_001033581.1 NP_001028753.1
NM_001033582.1 NP_001028754.1
NM_001242874.1 NP_001229803.1
NM_002744.4 NP_002735.3
XM_017001790.1 XP_016857279.1
XM_017001791.1 XP_016857280.1
XM_017001796.1 XP_016857285.1
XM_017001798.1 XP_016857287.1
XM_017001799.1 XP_016857288.1
XM_017001801.1 XP_016857290.1
XM_017001804.1 XP_016857293.1
XM_017001805.1 XP_016857294.1
AK097627.1
AK131526.1
BC008058.2 AAH08058.1
BC014270.2 AAH14270.1
Z15108.1 CAA78813.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC105378591 LOC101928626 TNFRSF18 MIR200B LOC102725121 ATAD3B FAM132A SLC35E2B LOC105378589 LOC100133331 MTND1P23 CALML6 LOC105378592 FAM41C CDK11B FAM138A MTND2P28 LINC00115 PLEKHN1 CPTP SLC35E2 MIR6723 MIR6859-1 ANKRD65 LOC100506504 MRPL20 MIR6726 OR4F16 SAMD11 SKI LOC107985728 TNFRSF4 FNDC10 OR4F5 LOC100129534 FAM87B LOC100288069 CPSF3L MORN1 TTLL10 GABRD ATAD3A LOC105378948 C1orf159 HES4 MIR200A LOC284600 TMEM88B LOC100130417 LOC100288175 CFAP74 MIR6727 SDF4 LOC105378947 WASH7P LOC102724312 MIR1302-2 ACAP3 MIR429 MMP23A LOC107985729 LOC100287934 SCNN1D LINC01342 MXRA8 LINC01128 PERM1 MIR6859-2 NADK MIR6808 VWA1 SSU72 PUSL1 FAAP20 ATAD3C UBE2J2 B3GALT6 NOC2L LOC107984841 MIB2 LOC148413 LOC100132287 AGRN LOC105378949 TMEM240 TTLL10-AS1 DVL1 ISG15 MMP23B TMEM52 LOC729737 OR4F29 LOC100134822 KLHL17 RNF223 DDX11L1 GNB1 TAS1R3 AURKAIP1 CCNL2 PRKCZ CDK11A
dgv49n54 Chr.1:2151050 - 2289783 on Build GRCh38 Loss LOC100506504 FAAP20 LOC105378592 PRKCZ SKI
nsv951530 Chr.1:2153662 - 2229961 on Build GRCh38 Deletion LOC100506504 FAAP20 LOC105378592 PRKCZ SKI
nsv834557 Chr.1:2117631 - 2311104 on Build GRCh38 Loss LOC100506504 FAAP20 LOC105378592 PRKCZ SKI

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More Information


Set Membership:

 Intragenic Exonic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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