Hs02934776_cn

• Gene Symbol: CPSF7
• Assay Reference Genome Location: Chr.11:61402968 on build GRCh38
• Cytoband: 11q12.2

Target Gene Details

• Entrez Gene ID: 79869
• Gene Name: cleavage and polyadenylation specific factor 7
• Gene Aliases: CFIm59
• Location: Chr.11:61402648-61429992 on Build GRCh38
• Assay Gene Location: Within Exon 12

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CPSF7	NM_001136040.2	10	3292	NP_001129512.1
	NM_001142565.1	10	3265	NP_001136037.1
	NM_024811.3	10	3368	NP_079087.3
	XM_005274298.4	10	3351	XP_005274355.1
	XM_005274299.4	10	3295	XP_005274356.1
	XM_005274303.4	11	3323	XP_005274360.1
	XM_011545257.2	11	3177	XP_011543559.1
	XM_011545258.2	10	3249	XP_011543560.1
	XM_011545259.2	10	3222	XP_011543561.1
	XM_011545260.2	11	3369	XP_011543562.1
	XM_011545261.2	11	3370	XP_011543563.1
	XM_011545262.2	11	3316	XP_011543564.1
	XM_011545263.2	11	3315	XP_011543565.1
	XM_017018345.1	11	3150	XP_016873834.1
	AK022591.1	5	2560	BAB14118.1
	AK092037.1	11	3052
	AK096343.1	10	3248
	AL512759.1	4	2147	CAC21678.1
	AL832546.1	8	2963
	AL832667.1	10	3255
	AL833332.1	10	3221
	BC018135.1	10	3258	AAH18135.1
	BX537888.1	10	3246	CAD97884.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv520751	Chr.11:61389584 - 61415916 on Build GRCh38	Gain	CPSF7 TMEM216
nsv832178	Chr.11:61402074 - 61573390 on Build GRCh38	Gain+Loss	MIR4488 PPP1R32 CPSF7 LRRC10B SDHAF2 SYT7

More Information

Additional Information:

For this assay, SNP(s) [rs117565407,rs139560333] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

RNA processing factor

Gene Ontology Categories:

Process(es)

mRNA splicing, via spliceosome
termination of RNA polymerase II transcription
mRNA 3'-end processing
protein tetramerization

Function(s)

nucleotide binding
protein binding
poly(A) RNA binding