Hs02937408_cn

• Gene Symbol: CDHR5
• Assay Reference Genome Location: Chr.11:619544 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 53841
• Gene Name: cadherin related family member 5
• Gene Aliases: MLPCDH, MU-PCDH, MUCDHL, MUPCDH
• Location: Chr.11:616565-625067 on Build GRCh38
• Assay Gene Location: Within Exon 11

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CDHR5	NM_001171968.1	11	1388	NP_001165439.1
	NM_021924.4	11	1388	NP_068743.2
	NM_031264.3	11	1388	NP_112554.2
	XM_006718253.3	11	1288	XP_006718316.1
	XM_011520188.2	11	1288	XP_011518490.1
	XM_011520189.2	11	1288	XP_011518491.1
	XM_011520190.2	11	1288	XP_011518492.1
	XM_011520191.2	11	1288	XP_011518493.1
	AF258675.1	12	1544	AAG16732.1
	AF258676.1	12	1544	AAG16733.1
	AF276242.1	11	1223	AAG30821.1
	AF301909.1	11	1223	AAG33495.1
	AK000226.1	11	1406	BAA91021.1
	AK000384.1	11	1293	BAA91130.1
	AK025012.1	4	375	BAB15052.1
	AK300991.1	12	1240
	AK308040.1	11	1312
	AK309157.1	10	1183
	AY358368.1	11	1245	AAQ88734.1
	BC038405.1	11	1245	AAH38405.1
	DQ491193.1	11	1295

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv951270	Chr.11:528401 - 628100 on Build GRCh38	Deletion	LOC143666 RASSF7 CDHR5 LMNTD2 HRAS SCT PHRF1 MIR210 LRRC56 IRF7 MIR210HG LOC101059906
nsv552861	Chr.11:589246 - 662407 on Build GRCh38	Loss	CDHR5 DRD4 SCT PHRF1 DEAF1 IRF7
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	CD151 CDHR5 HRAS SCT MIR6744 CEND1 CHID1 SNORA52 MUC2 SLC25A22 DRD4 PHRF1 LRRC56 TOLLIP MUC6 ANO9 PNPLA2 TALDO1 LOC101927503 CRACR2B LMNTD2 PTDSS2 TMEM80 LOC171391 MIR210HG POLR2L AP2A2 LOC101059906 TOLLIP-AS1 LOC143666 RASSF7 SIGIRR MUC5AC PANO1 RPLP2 MIR210 RNH1 DEAF1 PIDD1 EPS8L2 MUC5B IRF7 PDDC1 TSPAN4
nsv1039558	Chr.11:534242 - 672091 on Build GRCh38	Gain	CDHR5 LMNTD2 HRAS SCT MIR210HG LOC143666 RASSF7 DRD4 PHRF1 MIR210 LRRC56 DEAF1 IRF7
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	CD151 CDHR5 HRAS SCT CEND1 CHID1 SNORA52 SLC25A22 DRD4 PKP3 PHRF1 LRRC56 ANO9 PNPLA2 TALDO1 CRACR2B LMNTD2 PTDSS2 TMEM80 LOC171391 MIR210HG POLR2L AP2A2 LOC101059906 B4GALNT4 LOC143666 RASSF7 SIGIRR PANO1 RPLP2 MIR210 RNH1 DEAF1 PIDD1 EPS8L2 IRF7 PDDC1 TSPAN4
nsv1053964	Chr.11:491334 - 692433 on Build GRCh38	Gain	CDHR5 LMNTD2 PTDSS2 HRAS SCT MIR210HG LOC101059906 LOC143666 RASSF7 DRD4 PHRF1 MIR210 LRRC56 RNH1 DEAF1 IRF7
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	CD151 CDHR5 HRAS SCT CEND1 CHID1 SNORA52 SLC25A22 DRD4 PHRF1 LRRC56 PNPLA2 TALDO1 CRACR2B LMNTD2 PTDSS2 TMEM80 LOC171391 MIR210HG POLR2L LOC101059906 LOC143666 RASSF7 PANO1 RPLP2 MIR210 RNH1 DEAF1 PIDD1 EPS8L2 IRF7 PDDC1 TSPAN4
dgv1524n54	Chr.11:610277 - 619789 on Build GRCh38	Loss	CDHR5 PHRF1 IRF7
nsv552856	Chr.11:549119 - 619789 on Build GRCh38	Gain	LOC143666 RASSF7 CDHR5 LMNTD2 PHRF1 MIR210 LRRC56 IRF7 MIR210HG
nsv552854	Chr.11:511805 - 619789 on Build GRCh38	Loss	LOC143666 RASSF7 CDHR5 LMNTD2 HRAS PHRF1 MIR210 LRRC56 IRF7 MIR210HG LOC101059906
dgv1523n54	Chr.11:557342 - 656940 on Build GRCh38	Gain	LOC143666 RASSF7 CDHR5 LMNTD2 DRD4 SCT PHRF1 MIR210 DEAF1 IRF7 MIR210HG
nsv552865	Chr.11:612843 - 626730 on Build GRCh38	Loss	CDHR5 SCT IRF7
nsv527327	Chr.11:295343 - 620599 on Build GRCh38	Loss	CDHR5 IFITM5 LMNTD2 PTDSS2 HRAS MIR210HG LOC101059906 B4GALNT4 LOC143666 RASSF7 IFITM3 IFITM2 SIGIRR PKP3 PHRF1 MIR210 LRRC56 RNH1 IRF7 ANO9 IFITM1 PGGHG
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	CD151 CDHR5 HRAS SCT MIR6744 CEND1 CHID1 SNORA52 MUC2 SLC25A22 DRD4 PKP3 PHRF1 LRRC56 TOLLIP MUC6 ANO9 PNPLA2 TALDO1 LOC101927503 CRACR2B LMNTD2 PTDSS2 TMEM80 LOC171391 MIR210HG POLR2L AP2A2 LOC101059906 B4GALNT4 LOC143666 RASSF7 SIGIRR MUC5AC PANO1 RPLP2 MIR210 RNH1 DEAF1 PIDD1 EPS8L2 MUC5B IRF7 PDDC1 TSPAN4
nsv552862	Chr.11:605856 - 619789 on Build GRCh38	Loss	CDHR5 PHRF1 IRF7
esv2762889	Chr.11:606294 - 653614 on Build GRCh38	Loss	CDHR5 DRD4 SCT PHRF1 DEAF1 IRF7
nsv528415	Chr.11:558884 - 620599 on Build GRCh38	Loss	LOC143666 RASSF7 CDHR5 LMNTD2 PHRF1 MIR210 IRF7 MIR210HG

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
cell differentiation
regulation of microvillus length
intermicrovillar adhesion

Function(s)

calcium ion binding
protein binding
beta-catenin binding
cell adhesion molecule binding