Hs02937408_cn

• Gene Symbol: CDHR5
• Assay Reference Genome Location: Chr.11:619544 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 53841
• Gene Name: cadherin related family member 5
• Gene Aliases: MLPCDH, MU-PCDH, MUCDHL, MUPCDH
• Location: Chr.11:616565-625067 on Build GRCh38
• Assay Gene Location: Within Exon 11

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CDHR5	NM_001171968.1	11	1388	NP_001165439.1
	NM_021924.4	11	1388	NP_068743.2
	NM_031264.3	11	1388	NP_112554.2
	XM_006718253.3	11	1288	XP_006718316.1
	XM_011520188.2	11	1288	XP_011518490.1
	XM_011520189.2	11	1288	XP_011518491.1
	XM_011520190.2	11	1288	XP_011518492.1
	XM_011520191.2	11	1288	XP_011518493.1
	AF258675.1	12	1544	AAG16732.1
	AF258676.1	12	1544	AAG16733.1
	AF276242.1	11	1223	AAG30821.1
	AF301909.1	11	1223	AAG33495.1
	AK000226.1	11	1406	BAA91021.1
	AK000384.1	11	1293	BAA91130.1
	AK025012.1	4	375	BAB15052.1
	AK300991.1	12	1240
	AK308040.1	11	1312
	AK309157.1	10	1183
	AY358368.1	11	1245	AAQ88734.1
	BC038405.1	11	1245	AAH38405.1
	DQ491193.1	11	1295

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv951270	Chr.11:528401 - 628100 on Build GRCh38	Deletion	LOC143666 MIR210 HRAS RASSF7 MIR210HG PHRF1 CDHR5 LRRC56 LOC101059906 IRF7 LMNTD2 SCT
nsv552861	Chr.11:589246 - 662407 on Build GRCh38	Loss	DRD4 DEAF1 PHRF1 CDHR5 IRF7 SCT
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	MIR6744 CDHR5 PIDD1 IRF7 TOLLIP-AS1 MUC6 PNPLA2 RPLP2 TSPAN4 POLR2L CHID1 LOC171391 SLC25A22 AP2A2 DEAF1 PTDSS2 EPS8L2 TALDO1 CD151 LRRC56 TOLLIP TMEM80 CRACR2B MUC5AC LOC143666 MIR210 RASSF7 MUC5B SIGIRR LOC101059906 PANO1 HRAS DRD4 MIR210HG SNORA52 CEND1 PHRF1 ANO9 LOC101927503 LMNTD2 RNH1 PDDC1 SCT MUC2
nsv1039558	Chr.11:534242 - 672091 on Build GRCh38	Gain	LOC143666 MIR210 RASSF7 CDHR5 IRF7 HRAS DRD4 MIR210HG DEAF1 PHRF1 LRRC56 LMNTD2 SCT
nsv1053964	Chr.11:491334 - 692433 on Build GRCh38	Gain	LOC143666 MIR210 RASSF7 CDHR5 LOC101059906 IRF7 HRAS DRD4 MIR210HG DEAF1 PTDSS2 PHRF1 LRRC56 LMNTD2 RNH1 SCT
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	CDHR5 PIDD1 IRF7 PNPLA2 RPLP2 TSPAN4 POLR2L CHID1 LOC171391 SLC25A22 AP2A2 DEAF1 PTDSS2 EPS8L2 TALDO1 CD151 LRRC56 TMEM80 CRACR2B LOC143666 MIR210 RASSF7 SIGIRR LOC101059906 B4GALNT4 PANO1 HRAS DRD4 MIR210HG SNORA52 CEND1 PHRF1 ANO9 LMNTD2 PKP3 RNH1 PDDC1 SCT
dgv1524n54	Chr.11:610277 - 619789 on Build GRCh38	Loss	PHRF1 CDHR5 IRF7
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	CDHR5 PIDD1 IRF7 PNPLA2 RPLP2 TSPAN4 POLR2L CHID1 LOC171391 SLC25A22 DEAF1 PTDSS2 EPS8L2 TALDO1 CD151 LRRC56 TMEM80 CRACR2B LOC143666 MIR210 RASSF7 LOC101059906 PANO1 HRAS DRD4 MIR210HG SNORA52 CEND1 PHRF1 LMNTD2 RNH1 PDDC1 SCT
nsv552856	Chr.11:549119 - 619789 on Build GRCh38	Gain	LOC143666 MIR210 RASSF7 MIR210HG PHRF1 CDHR5 LRRC56 IRF7 LMNTD2
nsv552865	Chr.11:612843 - 626730 on Build GRCh38	Loss	CDHR5 IRF7 SCT
dgv1522n54	Chr.11:557342 - 656845 on Build GRCh38	Loss	LOC143666 MIR210 DRD4 RASSF7 MIR210HG DEAF1 PHRF1 CDHR5 IRF7 LMNTD2 SCT
nsv467634	Chr.11:511805 - 619789 on Build GRCh38	Loss	LOC143666 MIR210 HRAS RASSF7 MIR210HG PHRF1 CDHR5 LRRC56 LOC101059906 IRF7 LMNTD2
nsv527327	Chr.11:295343 - 620599 on Build GRCh38	Loss	LOC143666 MIR210 RASSF7 CDHR5 SIGIRR LOC101059906 IRF7 IFITM2 B4GALNT4 IFITM1 HRAS MIR210HG PTDSS2 IFITM3 PHRF1 PGGHG ANO9 LRRC56 IFITM5 LMNTD2 PKP3 RNH1
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	MIR6744 CDHR5 PIDD1 IRF7 MUC6 PNPLA2 RPLP2 TSPAN4 POLR2L CHID1 LOC171391 SLC25A22 AP2A2 DEAF1 PTDSS2 EPS8L2 TALDO1 CD151 LRRC56 TOLLIP TMEM80 CRACR2B MUC5AC LOC143666 MIR210 RASSF7 MUC5B SIGIRR LOC101059906 B4GALNT4 PANO1 HRAS DRD4 MIR210HG SNORA52 CEND1 PHRF1 ANO9 LOC101927503 LMNTD2 PKP3 RNH1 PDDC1 SCT MUC2
nsv552862	Chr.11:605856 - 619789 on Build GRCh38	Loss	PHRF1 CDHR5 IRF7
esv2762889	Chr.11:606294 - 653614 on Build GRCh38	Loss	DRD4 DEAF1 PHRF1 CDHR5 IRF7 SCT
nsv528415	Chr.11:558884 - 620599 on Build GRCh38	Loss	LOC143666 MIR210 RASSF7 MIR210HG PHRF1 CDHR5 IRF7 LMNTD2

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
cell differentiation
regulation of microvillus length
intermicrovillar adhesion

Function(s)

calcium ion binding
protein binding
beta-catenin binding
cell adhesion molecule binding