Hs02938207_cn

• Gene Symbol: PCDHA1
• Assay Reference Genome Location: Chr.5:140843365 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56147
• Gene Name: protocadherin alpha 1
• Gene Aliases: PCDH-ALPHA1
• Location: Chr.5:140786136-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA1	NM_018900.3			NP_061723.1
	NM_031411.2			NP_113599.1
	AF152305.1			AAD43699.1
	AF169695.1			AAF89692.1

Target Gene Details

• Entrez Gene ID: 56146
• Gene Name: protocadherin alpha 2
• Gene Aliases: PCDH-ALPHA2
• Location: Chr.5:140794859-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA2	NM_018905.2			NP_061728.1
	AF152310.1			AAD43704.1

Target Gene Details

• Entrez Gene ID: 56145
• Gene Name: protocadherin alpha 3
• Gene Aliases: PCDH-ALPHA3
• Location: Chr.5:140801198-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA3	NM_018906.2			NP_061729.1
	AF152311.1			AAD43705.1

Target Gene Details

• Entrez Gene ID: 56144
• Gene Name: protocadherin alpha 4
• Gene Aliases: CNR1, CNRN1, CRNR1, PCDH-ALPHA4
• Location: Chr.5:140807074-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA4	NM_018907.3			NP_061730.1
	AB208925.1			BAD92162.1
	AF152312.1			AAD43706.1

Target Gene Details

• Entrez Gene ID: 56143
• Gene Name: protocadherin alpha 5
• Gene Aliases: CNR6, CNRN6, CNRS6, CRNR6, PCDH-ALPHA5
• Location: Chr.5:140821776-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA5	NM_018908.2			NP_061731.1
	AB208863.1			BAD92100.1
	AF152313.1			AAD43707.1
	BC033735.1			AAH33735.1

Target Gene Details

• Entrez Gene ID: 56142
• Gene Name: protocadherin alpha 6
• Gene Aliases: CNR2, CNRN2, CNRS2, CRNR2, PCDH-ALPHA6
• Location: Chr.5:140827922-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA6	NM_018909.3			NP_061732.1
	NM_031849.2			NP_114037.1
	AB209205.1			BAD92442.1
	AF152314.1			AAD43708.1
	AF169694.1			AAF89691.1
	BC036674.2			AAH36674.1

Target Gene Details

• Entrez Gene ID: 56141
• Gene Name: protocadherin alpha 7
• Gene Aliases: CNR4, CNRN4, CNRS4, CRNR4, PCDH-ALPHA7
• Location: Chr.5:140834384-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA7	NM_018910.2			NP_061733.1
	AF152315.1			AAD43709.1

Target Gene Details

• Entrez Gene ID: 56140
• Gene Name: protocadherin alpha 8
• Gene Aliases: PCDH-ALPHA8
• Location: Chr.5:140841322-141012344 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA8	NM_018911.2	1	2044	NP_061734.1
	NM_031856.1	1	2044	NP_114062.1
	AF152316.1	1	2044	AAD43710.1
	AF152486.1	1	2044	AAD43747.1
	BC136749.1	1	2139
	BC136750.1	1	2139

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv599839	Chr.5:140837299 - 140848579 on Build GRCh38	Gain	PCDHA5 PCDHA4 PCDHA1 PCDHA7 PCDHA8 PCDHA9 PCDHA6 PCDHA2 PCDHA3
nsv819207	Chr.5:140842721 - 140859461 on Build GRCh38	Gain	PCDHA10 PCDHA5 PCDHA4 PCDHA1 PCDHA7 PCDHA8 PCDHA9 PCDHA6 PCDHA2 PCDHA3
esv33939	Chr.5:140837491 - 140859238 on Build GRCh38	Gain+Loss	PCDHA10 PCDHA5 PCDHA4 PCDHA1 PCDHA7 PCDHA8 PCDHA9 PCDHA6 PCDHA2 PCDHA3
dgv1651e212	Chr.5:140838196 - 140852242 on Build GRCh38	Loss	PCDHA5 PCDHA4 PCDHA1 PCDHA7 PCDHA8 PCDHA9 PCDHA6 PCDHA2 PCDHA3
nsv10753	Chr.5:140842575 - 140859579 on Build GRCh38	Gain	PCDHA10 PCDHA5 PCDHA4 PCDHA1 PCDHA7 PCDHA8 PCDHA9 PCDHA6 PCDHA2 PCDHA3
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHGB7 PCDHB14 PCDHGB2 PCDHA8 PCDHGA10 PCDHGB8P PCDHA2 PCDHGB6 PCDHGA1 PCDHGA9 PCDHAC2 PCDHB16 PCDHB7 PCDHGB3 PCDHB2 PCDHA10 PCDHA5 PCDHB10 PCDHGA4 PCDHB19P TAF7 PCDHA12 PCDHGA11 PCDHA6 PCDHB8 PCDHB15 PCDHA1 PCDHB11 PCDHA13 PCDHA3 PCDHGA5 PCDHGA2 PCDHB18P PCDHA4 PCDHGB4 PCDHGA6 PCDHA11 PCDHGA3 PCDHB12 PCDHB4 LOC101926905 PCDHGB5 SLC25A2 PCDHGA8 PCDHGA12 PCDHGA7 PCDHB17P PCDHAC1 PCDHB5 PCDHA7 PCDHB13 PCDHB1 PCDHGB1 PCDHB9 PCDHA9 PCDHB6 PCDHB3
dgv138e203	Chr.5:140838209 - 140874533 on Build GRCh38	Loss	PCDHA10 PCDHA5 PCDHA4 PCDHA1 PCDHA7 PCDHA8 PCDHA9 PCDHA6 PCDHA2 PCDHA3 PCDHA11
dgv1653e212	Chr.5:140839141 - 140874132 on Build GRCh38	Loss	PCDHA10 PCDHA5 PCDHA4 PCDHA1 PCDHA7 PCDHA8 PCDHA9 PCDHA6 PCDHA2 PCDHA3 PCDHA11
nsv1133616	Chr.5:140842215 - 140848715 on Build GRCh38	Deletion	PCDHA5 PCDHA4 PCDHA1 PCDHA7 PCDHA8 PCDHA9 PCDHA6 PCDHA2 PCDHA3
dgv970n67	Chr.5:140784829 - 140843644 on Build GRCh38	Gain	PCDHA5 PCDHA4 PCDHA1 PCDHA7 PCDHA8 PCDHA6 PCDHA2 PCDHA3
nsv436885	Chr.5:140835434 - 140846096 on Build GRCh38	Insertion	PCDHA5 PCDHA4 PCDHA1 PCDHA7 PCDHA8 PCDHA6 PCDHA2 PCDHA3
nsv980734	Chr.5:140841022 - 140843672 on Build GRCh38	Duplication	PCDHA5 PCDHA4 PCDHA1 PCDHA7 PCDHA8 PCDHA6 PCDHA2 PCDHA3
dgv972n67	Chr.5:140843057 - 140843649 on Build GRCh38	Gain	PCDHA5 PCDHA4 PCDHA1 PCDHA7 PCDHA8 PCDHA6 PCDHA2 PCDHA3
esv3606958	Chr.5:140842689 - 140859762 on Build GRCh38	Loss	PCDHA10 PCDHA5 PCDHA4 PCDHA1 PCDHA7 PCDHA8 PCDHA9 PCDHA6 PCDHA2 PCDHA3
esv3566721	Chr.5:140840563 - 140861415 on Build GRCh38	Deletion	PCDHA10 PCDHA5 PCDHA4 PCDHA1 PCDHA7 PCDHA8 PCDHA9 PCDHA6 PCDHA2 PCDHA3
dgv971n67	Chr.5:140842564 - 140859431 on Build GRCh38	Loss	PCDHA10 PCDHA5 PCDHA4 PCDHA1 PCDHA7 PCDHA8 PCDHA9 PCDHA6 PCDHA2 PCDHA3
dgv1043e199	Chr.5:140842260 - 140861207 on Build GRCh38	Deletion	PCDHA10 PCDHA5 PCDHA4 PCDHA1 PCDHA7 PCDHA8 PCDHA9 PCDHA6 PCDHA2 PCDHA3
dgv3182n106	Chr.5:140842552 - 140859353 on Build GRCh38	Deletion	PCDHA10 PCDHA5 PCDHA4 PCDHA1 PCDHA7 PCDHA8 PCDHA9 PCDHA6 PCDHA2 PCDHA3
nsv1024237	Chr.5:140810775 - 140852242 on Build GRCh38	Loss	PCDHA5 PCDHA4 PCDHA1 PCDHA7 PCDHA8 PCDHA9 PCDHA6 PCDHA2 PCDHA3
esv2730839	Chr.5:140842540 - 140859393 on Build GRCh38	Deletion	PCDHA10 PCDHA5 PCDHA4 PCDHA1 PCDHA7 PCDHA8 PCDHA9 PCDHA6 PCDHA2 PCDHA3
nsv830508	Chr.5:140675388 - 140869073 on Build GRCh38	Loss	PCDHA10 PCDHA5 PCDHA4 HARS2 ZMAT2 PCDHA8 PCDHA6 PCDHA2 PCDHA11 HARS PCDHA1 VTRNA1-3 PCDHA7 VTRNA1-2 VTRNA1-1 PCDHA9 PCDHA3
esv2861013	Chr.5:140834461 - 140848573 on Build GRCh38	Duplication	PCDHA5 PCDHA4 PCDHA1 PCDHA7 PCDHA8 PCDHA9 PCDHA6 PCDHA2 PCDHA3
nsv599841	Chr.5:140841349 - 140856513 on Build GRCh38	Loss	PCDHA10 PCDHA5 PCDHA4 PCDHA1 PCDHA7 PCDHA8 PCDHA9 PCDHA6 PCDHA2 PCDHA3
nsv823251	Chr.5:140842018 - 140843644 on Build GRCh38	Gain	PCDHA5 PCDHA4 PCDHA1 PCDHA7 PCDHA8 PCDHA6 PCDHA2 PCDHA3
dgv10092n54	Chr.5:140835344 - 140850785 on Build GRCh38	Loss	PCDHA5 PCDHA4 PCDHA1 PCDHA7 PCDHA8 PCDHA9 PCDHA6 PCDHA2 PCDHA3
dgv1044e199	Chr.5:140843360 - 140849907 on Build GRCh38	Deletion	PCDHA5 PCDHA4 PCDHA1 PCDHA7 PCDHA8 PCDHA9 PCDHA6 PCDHA2 PCDHA3

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
nervous system development

Function(s)

calcium ion binding
protein binding