Genomic Map
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Target Gene Details
Entrez Gene ID: | 3978 |
Gene Name: | DNA ligase 1 |
Gene Aliases: |
- |
Location: |
Chr.19:48115445-48170603 on Build GRCh38 |
Assay Gene Location: | Within Exon 25 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| LIG1 | NM_000234.2 | NP_000225.1 | ||
| NM_001289063.1 | NP_001275992.1 | |||
| NM_001289064.1 | NP_001275993.1 | |||
| NM_001320970.1 | NP_001307899.1 | |||
| NM_001320971.1 | NP_001307900.1 | |||
| NR_110296.1 | 24 | 2821 | ||
| NR_135497.1 | 24 | 2824 | ||
| NR_135498.1 | 22 | 2653 | ||
| NR_135499.1 | 23 | 2734 | ||
| NR_135500.1 | 24 | 3001 | ||
| NR_135501.1 | ||||
| XM_017026809.1 | XP_016882298.1 | |||
| AB208791.1 | 24 | 2544 | BAD92028.1 | |
| AK225863.1 | ||||
| AK297296.1 | ||||
| AK300370.1 | ||||
| AK300607.1 | ||||
| AK314210.1 | ||||
| BC108318.1 | AAI08319.1 | |||
| BC110622.2 | 23 | 2473 | AAI10623.1 | |
| M36067.1 | AAA59518.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv833853 | Chr.19:47982539 - 48184317 on Build GRCh38 | Loss |
 PLA2G4C
CABP5
ELSPBP1
LIG1
BSPH1
PLA2G4C-AS1
C19orf68
|
| nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss |
SNAR-A4
TEAD2
RPL18
FUT1
SNAR-A11
SNAR-A13
SNAR-G2
SNAR-A2
ZNF473
PTOV1-AS2
PTH2
MED25
SLC17A7
CABP5
AP2A1
SNAR-A9
SPHK2
PLEKHA4
BCL2L12
CD37
FCGRT
RASIP1
SNAR-A10
NTN5
SNAR-C1
FTL
CGB8
CCDC114
GFY
PPFIA3
PRMT1
CGB7
PRR12
SNAR-A6
SNAR-A5
SNAR-A8
TSKS
C19orf73
TULP2
FGF21
SNAR-A1
GRIN2D
DKKL1
IL4I1
CGB3
SNAR-B1
BAX
PRRG2
BSPH1
MIR5088
LMTK3
MIR4750
SYNGR4
ADM5
SLC6A16
CPT1C
FLT3LG
KDELR1
PLA2G4C-AS1
LOC105372430
SPACA4
SNAR-B2
TBC1D17
PNKP
SULT2B1
SNAR-D
SNAR-A14
IZUMO1
TMEM143
FUT2
SNAR-C4
LHB
GRWD1
IRF3
GYS1
RPS11
MIR150
SIGLEC16
PLA2G4C
DHDH
NUCB1-AS1
SNAR-C2
SEC1P
TRPM4
MIR6800
SNORD35B
KCNJ14
SNAR-G1
ATF5
NOSIP
AKT1S1
CA11
SNRNP70
BCAT2
LOC105447645
PIH1D1
LOC101059948
SNORD35A
RCN3
PPP1R15A
NUCB1
SCAF1
VRK3
SNAR-A3
LOC101928295
FUZ
CGB1
SNORD33
SNORD34
CARD8-AS1
RRAS
LOC100287477
ELSPBP1
FAM83E
SNAR-C5
RUVBL2
NUP62
SNAR-A12
PTOV1-AS1
NTF4
DBP
CYTH2
SNAR-A7
MAMSTR
MIR4751
SIGLEC11
CGB5
MIR6799
RPL13A
SNORD32A
KCNA7
FLJ26850
HRC
CCDC155
EMP3
C19orf68
MIR4324
CGB2
LIG1
MIR4749
LIN7B
CARD8
HSD17B14
ALDH16A1
SNAR-C3
PTOV1
ZNF114
MIR6798
|
| esv34181 | Chr.19:48009377 - 48416682 on Build GRCh38 | Loss |
SYNGR4
CARD8-AS1
ELSPBP1
KDELR1
PLA2G4C-AS1
EMP3
C19orf68
GRIN2D
PLA2G4C
CCDC114
CABP5
LIG1
TMEM143
CARD8
ZNF114
|
| nsv953596 | Chr.19:48120744 - 48134943 on Build GRCh38 | Deletion |
LIG1
|
Back To TopMore Information
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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