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See other PDPK1 CNV Assays ›
Gene Symbol
PDPK1
Assay Reference Genome
Location

Chr.16:2586715 on build GRCh38
Cytoband
16p13.3
Assay ID Hs02940112_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 5170

Gene Name:

 3-phosphoinositide dependent protein kinase 1

Gene Aliases:

 PDK1, PDPK2, PDPK2P, PRO0461

Location:

 Chr.16:2537964-2603190 on Build GRCh38

Assay Gene Location:

 Within Exon 14
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PDPK1 NM_001261816.1 11 1314 NP_001248745.1
NM_002613.4 11 1314 NP_002604.1
NM_031268.5 8 933 NP_112558.2
XM_011522521.2 11 5002 XP_011520823.1
XM_011522523.2 8 4626 XP_011520825.1
XM_017023271.1 11 5007 XP_016878760.1
XM_017023272.1 11 1563 XP_016878761.1
XM_017023273.1 11 1272 XP_016878762.1
XM_017023274.1 12 1410 XP_016878763.1
XM_017023275.1 8 4632 XP_016878764.1
XM_017023276.1 8 876 XP_016878765.1
XM_017023277.1 9 974 XP_016878766.1
AB209835.1 11 1281 BAD93072.1
AF017995.1 11 1245 AAC51825.1
AK131060.1 11 1248
AK222581.1 11 1257 BAD96301.1
BC006339.2 8 894 AAH06339.2
BC012103.1 11 1274 AAH12103.1
BC033494.1 8 846 AAH33494.1
CR536517.1 11 1165 CAG38755.1
Y15056.1 11 1244 CAA75341.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv977895 Chr.16:2582644 - 2586873 on Build GRCh38 Duplication PDPK1
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication NUBP2 GNG13 ABCA3 MSLN NTN3 SLC9A3R2 MRPS34 PRSS27 GFER STUB1 MIR1225 KCTD5 MIR3178 MEIOB SNRNP25 LOC105371038 SNORD60 WDR24 HBA2 CCNF MAPK8IP3 E4F1 HAGHL RAB40C CEMP1 FBXL16 RAB26 MLST8 PTX4 AMDHD2 TBL3 HBA1 SNORA64 TSC2 HBM CCDC78 DDX11L10 ERVK13-1 CCDC154 SNHG19 C16orf91 HBZ PGP PRR35 MIR662 LINC00254 CLCN7 PRR25 RHOT2 MIR940 LOC107984876 MIR3177 MIR6767 LOC101929280 MIR3176 MIR6859-4 CRAMP1 WFIKKN1 AXIN1 UBE2I NTHL1 MSRB1 CASKIN1 TPSG1 MIR6511B1 LOC105371049 BRICD5 RNF151 LMF1 CHTF18 RNPS1 PRSS29P EME2 METTL26 ECI1 RAB11FIP3 SYNGR3 NARFL MIR5587 MIR4516 RHBDF1 RGS11 ZNF598 PIGQ TPSB2 LOC106660606 FAM234A TMEM8A TSR3 SSTR5-AS1 SNORA10 CACNA1H RHBDL1 TBC1D24 CAPN15 UNKL FAHD1 NOXO1 DECR2 TPSAB1 ABCA17P NHLRC4 FAM173A C16orf59 NPRL3 MCRIP2 PKD1 TPSD1 C1QTNF8 LINC00235 MIR3180-5 HBQ1 RPL3L IFT140 DNASE1L2 MIR3677 LOC652276 LOC729652 LOC105371184 SPSB3 NPW HS3ST6 RPUSD1 MPG LMF1-AS1 LOC105371047 PDIA2 IGFALS SNORA78 LOC100134368 METRN BAIAP3 HN1L NDUFB10 LOC105371045 POLR3K LOC100287175 TRAF7 PDPK1 RPS2 SSTR5 ARHGDIG WASIR2 MRPL28 RPL23AP5 WDR90 MIR6768 GNPTG LOC105371046 ATP6V0C HAGH NME3 SOX8 LOC107987233 TELO2 TMEM204 JMJD8 SNHG9 NME4 FLJ42627 MIR4717 LUC7L
esv2760067 Chr.16:2486824 - 2820535 on Build GRCh38 Gain+Loss PRSS41 CEMP1 PDPK1 TCEB2 SRRM2 PRSS27 AMDHD2 KCTD5 MIR3178 PRSS21 SRRM2-AS1 ATP6V0C PRSS33 TBC1D24 FLJ42627 ERVK13-1 LOC652276
esv3637634 Chr.16:2586284 - 2610862 on Build GRCh38 Gain PDPK1 LOC652276
nsv833122 Chr.16:2501717 - 2663937 on Build GRCh38 Loss ATP6V0C CEMP1 PDPK1 TBC1D24 AMDHD2 FLJ42627 MIR3178 ERVK13-1 LOC652276
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain ECI1 SNHG19 ABCA3 NTN3 MIR4516 MIR1225 PGP MIR3178 LOC106660606 SNORD60 MIR940 MIR6767 TBC1D24 CCNF E4F1 TRAF7 CEMP1 PDPK1 RAB26 CASKIN1 ABCA17P MLST8 MIR6511B1 AMDHD2 C16orf59 MIR6768 LOC105371049 PKD1 BRICD5 ATP6V0C TSC2 MIR3180-5 RNPS1 DNASE1L2 MIR4717 MIR3677 LOC652276 LOC729652
nsv833123 Chr.16:2561247 - 2764988 on Build GRCh38 Gain+Loss PDPK1 SRRM2 PRSS27 KCTD5 FLJ42627 ERVK13-1 LOC652276 SRRM2-AS1

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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