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See other AGPAT1 CNV Assays ›
Gene Symbol
AGPAT1
Assay Reference Genome
Location

Chr.6:32169167 on build GRCh38
Cytoband
6p21.32
Assay ID Hs02952477_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10554

Gene Name:

 1-acylglycerol-3-phosphate O-acyltransferase 1

Gene Aliases:

 1-AGPAT1, G15, LPAAT-alpha, LPAATA

Location:

 Chr.6:32168206-32178111 on Build GRCh38

Assay Gene Location:

 Within Exon 10
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
AGPAT1 NM_006411.3 7 1296 NP_006402.1
NM_032741.4 7 1081 NP_116130.2
XM_005248805.3 7 1599 XP_005248862.1
XM_005248806.2 7 1492 XP_005248863.1
XM_011514234.1 7 1263 XP_011512536.1
AF007145.1 6 845 AAC19153.1
AF218034.1 7 1059 AAG17276.1
AK056346.1 5 1493
AK058025.1 8 1201
AK129818.1 7 1042
AK299252.1 7 1093
BC002402.2 7 1035 AAH02402.1
BC003007.1 7 1035 AAH03007.1
BC004310.1 7 1240 AAH04310.1
BC090849.1 7 1252 AAH90849.1
U56417.1 7 1279 AAB58775.1
U75971.1 6 970 AAB96378.1
Y09565.1 7 1070 CAA70758.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830629 Chr.6:32076201 - 32222010 on Build GRCh38 Loss GPSM3 MIR6721 PBX2 LOC100507547 TNXB NOTCH4 AGPAT1 MIR6833 PPT2 PRRT1 ATF6B EGFL8 PPT2-EGFL8 FKBPL AGER RNF5
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss GPSM3 MIR6721 ZBTB12 C4B HCG23 SNORD48 MIR6833 MIR1236 HLA-DRB5 HLA-DQA1 PPT2 ATF6B EHMT2 CFB FKBPL HLA-DQB1-AS1 TNXB NOTCH4 CYP21A2 NEU1 NELFE SKIV2L HLA-DRA LOC101929163 HSPA1B C2 DXO AGER RNF5 PBX2 SLC44A4 C2-AS1 C6orf10 HSPA1A PPT2-EGFL8 TNXA HLA-DRB1 C6orf48 BTNL2 SNORD52 LOC100507547 STK19 AGPAT1 PRRT1 CYP21A1P EGFL8 HLA-DQB1 HLA-DRB6 C4A
dgv10472n54 Chr.6:31985690 - 32812026 on Build GRCh38 Loss GPSM3 MIR6721 PBX2 C4B HCG23 MIR6833 HLA-DRB5 C6orf10 HLA-DQA1 PPT2 ATF6B PPT2-EGFL8 HLA-DQA2 TNXA HLA-DQB2 FKBPL HLA-DRB1 HLA-DQB1-AS1 BTNL2 LOC100507547 TNXB NOTCH4 AGPAT1 CYP21A2 PRRT1 CYP21A1P EGFL8 MIR3135B HLA-DQB1 HLA-DRA LOC101929163 HLA-DRB6 AGER C4A RNF5
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss GPSM3 MIR6721 PBX2 C4B C2-AS1 MIR6833 MIR1236 PPT2 ATF6B PPT2-EGFL8 TNXA CFB FKBPL LOC100507547 TNXB NOTCH4 STK19 AGPAT1 CYP21A2 NELFE PRRT1 CYP21A1P SKIV2L EGFL8 C2 DXO AGER C4A RNF5
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion CLIC1 NFKBIL1 GPSM3 SNORD117 MIR6721 ZBTB12 C4B LST1 HCG23 SNORD48 LOC100287329 HCG26 MIR6833 LSM2 MIR1236 HLA-DRB5 PPT2 MIR4646 ATF6B HCP5 MSH5 PRRC2A EHMT2 LTB LY6G5B VWA7 CFB FKBPL APOM SNORA38 TNF CSNK2B LY6G6E TNXB LY6G6D NOTCH4 C6orf25 MCCD1 CYP21A2 NEU1 HSPA1L ABHD16A NELFE ATP6V1G2-DDX39B SKIV2L MICB SAPCD1-AS1 HLA-DRA LY6G5C LOC101929163 HSPA1B MSH5-SAPCD1 LOC102725068 C2 LY6G6F DXO AGER ATP6V1G2 RNF5 DDAH2 AIF1 PBX2 SLC44A4 C2-AS1 MIR6832 C6orf10 BAG6 DDX39B-AS1 HSPA1A PPT2-EGFL8 TNXA C6orf47 DDX39B HLA-DRB1 C6orf48 BTNL2 SNORD52 LOC100507547 SAPCD1 STK19 AGPAT1 LTA SNORD84 LY6G6C PRRT1 CYP21A1P NCR3 EGFL8 VARS GPANK1 HLA-DRB6 C4A
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion DAXX NFKBIL1 PSMB8 GPSM3 SNORD117 ZBTB12 LST1 SNORD48 LOC100287329 HCG26 MIR6833 HLA-DOA HLA-DRB5 MIR4646 HLA-DOB CUTA LTB HLA-DQA2 CFB HSD17B8 APOM SNORA38 HLA-DQB1-AS1 TNF C6orf25 MCCD1 NEU1 ATP6V1G2-DDX39B SKIV2L SAPCD1-AS1 HLA-DMA LY6G5C MSH5-SAPCD1 LOC102725068 C2 LY6G6F RNF5 ZBTB22 HCG25 MIR6832 C6orf10 PPP1R2P1 DDX39B-AS1 HSPA1A HLA-DMB PHF1 C6orf48 BTNL2 LOC100507547 LTA RPS18 LY6G6C PRRT1 NCR3 VARS HLA-DRB6 PSMB8-AS1 CLIC1 MIR6721 RING1 C4B HCG23 WDR46 MIR6834 LSM2 MIR1236 HLA-DQA1 PPT2 ATF6B HCP5 MSH5 BRD2 PRRC2A EHMT2 HLA-DPB2 HLA-DPB1 LY6G5B VWA7 FKBPL PFDN6 CSNK2B SYNGAP1 LY6G6E TNXB LY6G6D NOTCH4 CYP21A2 HSPA1L ABHD16A NELFE MICB RGL2 HLA-DRA LOC101929163 HSPA1B DXO AGER ATP6V1G2 DDAH2 AIF1 PBX2 SLC44A4 LOC100294145 COL11A2 SLC39A7 C2-AS1 HCG24 BAG6 HLA-DPA1 PPT2-EGFL8 MIR219A1 TNXA HLA-DQB2 C6orf47 DDX39B MIR5004 HLA-DRB1 KIFC1 MIR6873 SNORD52 SAPCD1 STK19 AGPAT1 ZBTB9 TAP2 PSMB9 VPS52 SNORD84 CYP21A1P TAP1 EGFL8 MIR3135B HLA-DQB1 B3GALT4 RXRB TAPBP GPANK1 C4A
nsv602104 Chr.6:32096949 - 32203906 on Build GRCh38 Loss GPSM3 MIR6721 PBX2 LOC100507547 TNXB NOTCH4 AGPAT1 MIR6833 PPT2 PRRT1 ATF6B EGFL8 PPT2-EGFL8 FKBPL AGER RNF5
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion DAXX NFKBIL1 PSMB8 GPSM3 SNORD117 ZBTB12 LST1 SNORD48 LOC100287329 HCG26 MIR6833 HLA-DOA HLA-DRB5 MIR4646 HLA-DOB CUTA LTB HLA-DQA2 CFB HSD17B8 APOM SNORA38 HLA-DQB1-AS1 TNF C6orf25 MCCD1 NEU1 ATP6V1G2-DDX39B SKIV2L SAPCD1-AS1 HLA-DMA LY6G5C MSH5-SAPCD1 LOC102725068 C2 LY6G6F RNF5 ZBTB22 HCG25 MIR6832 C6orf10 PPP1R2P1 DDX39B-AS1 HSPA1A HLA-DMB PHF1 C6orf48 BTNL2 LOC100507547 LTA RPS18 LY6G6C PRRT1 NCR3 VARS HLA-DRB6 PSMB8-AS1 CLIC1 MIR6721 RING1 C4B HCG23 WDR46 MIR6834 LSM2 MIR1236 HLA-DQA1 PPT2 ATF6B HCP5 MSH5 BRD2 PRRC2A EHMT2 HLA-DPB2 HLA-DPB1 LY6G5B VWA7 FKBPL PFDN6 CSNK2B SYNGAP1 LY6G6E TNXB LY6G6D NOTCH4 CYP21A2 HSPA1L ABHD16A NELFE MICB RGL2 HLA-DRA LOC101929163 HSPA1B DXO AGER ATP6V1G2 DDAH2 AIF1 PBX2 SLC44A4 LOC100294145 COL11A2 SLC39A7 C2-AS1 HCG24 BAG6 HLA-DPA1 PPT2-EGFL8 MIR219A1 TNXA HLA-DQB2 C6orf47 DDX39B MIR5004 HLA-DRB1 KIFC1 MIR6873 SNORD52 SAPCD1 STK19 AGPAT1 ZBTB9 TAP2 PSMB9 VPS52 SNORD84 CYP21A1P TAP1 EGFL8 MIR3135B HLA-DQB1 B3GALT4 RXRB TAPBP GPANK1 C4A
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss CLIC1 NFKBIL1 GPSM3 SNORD117 MIR6721 ZBTB12 C4B LST1 HCG23 SNORD48 LOC100287329 HCG26 MICA MIR6833 LSM2 MIR1236 PPT2 MIR4646 ATF6B HCP5 MSH5 PRRC2A EHMT2 LTB LY6G5B VWA7 CFB FKBPL APOM SNORA38 TNF CSNK2B LY6G6E TNXB LY6G6D NOTCH4 C6orf25 MCCD1 CYP21A2 NEU1 HSPA1L ABHD16A NELFE ATP6V1G2-DDX39B SKIV2L MICB SAPCD1-AS1 HLA-DRA LY6G5C LOC101929163 HSPA1B MSH5-SAPCD1 LOC102725068 C2 LY6G6F DXO AGER ATP6V1G2 RNF5 DDAH2 AIF1 PBX2 SLC44A4 C2-AS1 MIR6832 C6orf10 BAG6 DDX39B-AS1 HSPA1A PPT2-EGFL8 TNXA C6orf47 DDX39B C6orf48 BTNL2 HLA-B SNORD52 LOC100507547 SAPCD1 STK19 AGPAT1 LTA MIR6891 SNORD84 LY6G6C PRRT1 CYP21A1P NCR3 EGFL8 VARS GPANK1 C4A

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