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See other SSU72 CNV Assays ›
Gene Symbol
SSU72
Assay Reference Genome
Location

Chr.1:1543971 on build GRCh38
Cytoband
1p36.33
Assay ID Hs02970852_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 29101

Gene Name:

 SSU72 homolog, RNA polymerase II CTD phosphatase

Gene Aliases:

 HSPC182, PNAS-120

Location:

 Chr.1:1541673-1574882 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 3 - Exon 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SSU72 NM_014188.2 NP_054907.1
AF161530.1 AAF29145.1
AF277178.1 AAK07538.1
AJ276409.1 CAC81713.1
AK001809.1 BAA91921.1
AK127149.1
AK297505.1
AK310067.1
BC008070.2 AAH08070.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv545000 Chr.1:1421170 - 1573654 on Build GRCh38 Loss TMEM240 ANKRD65 ATAD3B ATAD3C LOC107985729 SSU72 VWA1 ATAD3A TMEM88B LOC102724312
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss ANKRD65 MIR6727 HES4 SSU72 ATAD3A MMP23A TNFRSF18 ACAP3 B3GALT6 NADK SCNN1D LOC100288175 LINC01128 MIR200A VWA1 LINC00115 SLC35E2 SDF4 NOC2L LOC105378948 SAMD11 ATAD3C MMP23B MIR200B FAM132A MRPL20 CPTP LOC100287934 LOC100130417 AURKAIP1 CDK11B MIB2 LOC148413 CDK11A ISG15 LOC100288069 TMEM240 LOC107985728 LOC107985729 UBE2J2 TTLL10-AS1 TNFRSF4 FNDC10 C1orf159 PLEKHN1 DVL1 MXRA8 SLC35E2B TMEM88B TTLL10 MIR429 FAM87B ATAD3B RNF223 PUSL1 CCNL2 TAS1R3 MIR6726 LOC284600 MIR6808 AGRN LOC102724312 KLHL17 CPSF3L LINC01342 FAM41C PERM1
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss ANKRD65 MIR6727 HES4 SSU72 B3GALT6 NADK SCNN1D LOC100288175 LINC00115 SDF4 GNB1 LOC100134822 LOC105378949 PRKCZ LOC729737 GABRD AURKAIP1 LOC100132287 CDK11B LOC148413 CDK11A ISG15 LOC100288069 LOC107985728 LOC107985729 TTLL10-AS1 LOC107984841 FNDC10 MORN1 MIR6859-1 SLC35E2B TMEM88B TTLL10 MIR1302-2 RNF223 MIR6726 LOC284600 LINC01342 FAM41C LOC102725121 MIR6859-2 LOC105378592 ATAD3A MMP23A TNFRSF18 ACAP3 LOC100133331 CFAP74 WASH7P LINC01128 LOC100506504 MIR200A VWA1 MIR6723 SLC35E2 LOC105378591 NOC2L LOC105378948 SAMD11 ATAD3C MMP23B MIR200B FAM132A MRPL20 CPTP OR4F29 LOC100287934 LOC100130417 LOC100129534 MIB2 TMEM240 UBE2J2 TNFRSF4 C1orf159 TMEM52 OR4F5 MTND2P28 MTND1P23 DDX11L1 PLEKHN1 DVL1 MXRA8 MIR429 FAM87B ATAD3B PUSL1 CCNL2 TAS1R3 MIR6808 AGRN LOC102724312 KLHL17 LOC105378589 FAM138A OR4F16 LOC101928626 CPSF3L LOC105378947 PERM1 CALML6 SKI FAAP20
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion TMEM240 ANKRD65 MIR6727 LOC107985729 SSU72 ATAD3A UBE2J2 TTLL10-AS1 TNFRSF4 TNFRSF18 ACAP3 B3GALT6 FNDC10 C1orf159 SCNN1D DVL1 MXRA8 MIR200A VWA1 TMEM88B TTLL10 SDF4 MIR429 ATAD3B PUSL1 CCNL2 ATAD3C TAS1R3 MIR6726 MIR6808 MMP23B MIR200B LOC102724312 FAM132A MRPL20 CPSF3L CPTP LINC01342 AURKAIP1 CDK11B MIB2 LOC148413
nsv1011818 Chr.1:1394332 - 1575421 on Build GRCh38 Gain TMEM240 ANKRD65 ATAD3B CCNL2 ATAD3C LOC107985729 SSU72 ATAD3A LOC102724312 MRPL20 VWA1 TMEM88B LOC148413
esv2758913 Chr.1:1389149 - 2092899 on Build GRCh38 Gain+Loss TMEM240 ANKRD65 LOC107985729 SSU72 ATAD3A MMP23A FNDC10 TMEM52 NADK CFAP74 VWA1 SLC35E2B TMEM88B SLC35E2 LOC105378591 ATAD3B CCNL2 ATAD3C MMP23B GNB1 LOC102724312 LOC105378949 LOC105378589 MRPL20 PRKCZ GABRD CALML6 CDK11B MIB2 LOC148413 CDK11A

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

protein phosphatase

Gene Ontology Categories:

Function(s) Process(es)


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