Hs03020587_cn

• Gene Symbol: C9orf139
• Assay Reference Genome Location: Chr.9:137031357 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 401563
• Gene Name: chromosome 9 open reading frame 139
• Gene Aliases: -
• Location: Chr.9:137027464-137037770 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
C9orf139	NM_207511.2			NP_997394.1
	AK124899.1			BAC85986.1

Target Gene Details

• Entrez Gene ID: 2529
• Gene Name: fucosyltransferase 7
• Gene Aliases: FucT-VII
• Location: Chr.9:137030174-137032840 on Build GRCh38
• Assay Gene Location: Within Exon 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FUT7	NM_004479.3	2	1231	NP_004470.1
	AK313124.1	2	865
	BC074746.2	2	407	AAH74746.2
	BC086312.1	2	1231	AAH86312.1
	U08112.1	2	519	AAA56869.1
	U11282.1	2	519	AAA20468.1
	X78031.1	2	504	CAA54962.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13007n54	Chr.9:136966179 - 137173890 on Build GRCh38	Loss	ABCA2 MAN1B1-AS1 PRR31 ENTPD2 LRRC26 MAN1B1 TMEM210 GRIN1 C9orf139 FUT7 PTGDS NPDC1 MIR3621 CLIC3 LOC101930307 UAP1L1 DPP7 C9orf142 LCNL1 SAPCD2
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	EXD3 CYSRT1 SSNA1 TMEM210 CCDC183 NELFB NPDC1 MIR3621 NDOR1 LCN12 EDF1 UAP1L1 RABL6 SAPCD2 ABCA2 PNPLA7 TUBB4B MAN1B1 MIR7114 RNF224 PHPT1 FUT7 NSMF TMEM203 DPP7 MIR4479 MAMDC4 SLC34A3 TOR4A ENTPD8 RNF208 GRIN1 C9orf139 LOC101930307 TPRN STPG3 C9orf142 FAM166A MAN1B1-AS1 CCDC183-AS1 PRR31 C8G NOXA1 ENTPD2 ANAPC2 LRRC26 TRAF2 NRARP PTGDS MIR4292 CLIC3 C9orf172 FBXW5 LCNL1 C9orf173-AS1
nsv951206	Chr.9:136944849 - 137114548 on Build GRCh38	Deletion	ABCA2 MAN1B1-AS1 PRR31 C8G ENTPD2 MAN1B1 C9orf139 FUT7 PTGDS NPDC1 CLIC3 LOC101930307 LCN12 UAP1L1 DPP7 C9orf142 LCNL1 SAPCD2
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	LCN8 SNAPC4 TMEM210 CCDC183 LINC01451 DNLZ NPDC1 TMEM141 MIR3621 NOTCH1 SDCCAG3 LCN12 EDF1 UAP1L1 SNORA17B RABL6 SAPCD2 ABCA2 FAM69B LCN10 MAN1B1 PHPT1 MIR4674 FUT7 CARD9 SEC16A EGFL7 DPP7 LOC100128593 MIR4673 NALT1 MIR4479 MAMDC4 LCN15 SNHG7 GRIN1 C9orf163 C9orf139 LOC101930307 C9orf142 INPP5E HSPC324 MIR126 MAN1B1-AS1 CCDC183-AS1 PRR31 MIR6722 C8G PMPCA ENTPD2 LRRC26 TRAF2 AGPAT2 LCN6 PTGDS MIR4292 CLIC3 SNORA17A C9orf172 FBXW5 LCNL1
esv2761561	Chr.9:137030185 - 137191593 on Build GRCh38	Gain	MAN1B1-AS1 ENTPD2 ANAPC2 LRRC26 MAN1B1 SSNA1 TMEM210 GRIN1 C9orf139 FUT7 NPDC1 MIR3621 LOC101930307 UAP1L1 DPP7 SAPCD2
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	EXD3 CYSRT1 LCN8 SSNA1 TMEM210 CCDC183 NELFB LINC01451 NPDC1 TMEM141 MIR3621 NDOR1 LCN12 EDF1 UAP1L1 SNORA17B RABL6 SAPCD2 ABCA2 FAM69B TUBB4B LCN10 MAN1B1 RNF224 PHPT1 FUT7 TMEM203 EGFL7 DPP7 LOC100128593 MIR4479 MAMDC4 LCN15 SNHG7 SLC34A3 TOR4A RNF208 GRIN1 C9orf139 LOC101930307 TPRN STPG3 C9orf142 FAM166A HSPC324 MIR126 MAN1B1-AS1 CCDC183-AS1 PRR31 MIR6722 C8G ENTPD2 ANAPC2 LRRC26 TRAF2 AGPAT2 NRARP LCN6 PTGDS MIR4292 CLIC3 SNORA17A C9orf172 FBXW5 LCNL1 C9orf173-AS1
nsv616004	Chr.9:137014976 - 137053021 on Build GRCh38	Loss	ABCA2 C9orf139 FUT7 NPDC1 ENTPD2

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

glycosyltransferase

Gene Ontology Categories:

Process(es)

CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation
leukocyte migration involved in immune response
protein glycosylation
protein N-linked glycosylation
fucosylation
L-fucose catabolic process

Function(s)

fucosyltransferase activity
alpha-(1->3)-fucosyltransferase activity