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See other SDF4 CNV Assays ›
Gene Symbol
SDF4
Assay Reference Genome
Location

Chr.1:1217047 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03033781_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 51150

Gene Name:

 stromal cell derived factor 4

Gene Aliases:

 Cab45, SDF-4

Location:

 Chr.1:1216908-1232067 on Build GRCh38

Assay Gene Location:

 Within Exon 8
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SDF4 NM_016176.3 7 1883 NP_057260.2
NM_016547.2 7 1999 NP_057631.1
AF153686.1 7 1979 AAD51612.1
AF178986.1 7 1963 AAF44350.1
AK000717.1 5 2746
AK027277.1 BAB55012.1
AK055331.1 2 2478
AK075352.1 7 1817 BAC11563.1
AK126927.1 3 3401
AK222521.1 7 1801 BAD96241.1
BC006211.2 7 1764 AAH06211.1
BC007625.1 6 1632 AAH07625.1
BC008917.2 7 1783 AAH08917.1
BC011244.1 7 1737 AAH11244.1
BC022375.1 7 1817 AAH22375.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain AGRN MIR200B PLEKHN1 PERM1 SAMD11 HES4 LOC107985728 MIR429 TNFRSF18 LOC100130417 RNF223 LOC284600 C1orf159 LOC105378948 LINC01342 NOC2L SDF4 ISG15 FAM41C TNFRSF4 LOC100288175 TTLL10 MIR200A TTLL10-AS1 KLHL17
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication AGRN MIR200B MIR6727 FAM132A PUSL1 SCNN1D MIR429 TNFRSF18 CPTP RNF223 MIR6726 TAS1R3 C1orf159 ACAP3 LOC105378948 LINC01342 B3GALT6 SDF4 UBE2J2 CPSF3L TNFRSF4 LOC100288175 TTLL10 MIR200A TTLL10-AS1
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss PLEKHN1 ATAD3C MIR6727 MMP23A PERM1 PUSL1 LOC148413 AURKAIP1 HES4 NADK LOC100287934 LOC100130417 CPTP MIB2 CCNL2 C1orf159 VWA1 B3GALT6 NOC2L LOC100288069 UBE2J2 LOC100288175 ANKRD65 MIR6808 MIR200A TTLL10-AS1 KLHL17 FAM87B AGRN MIR200B CDK11A FAM132A SCNN1D SAMD11 LOC107985728 SLC35E2 MXRA8 MMP23B MIR429 TNFRSF18 SSU72 SLC35E2B RNF223 MIR6726 ATAD3A TAS1R3 LOC284600 ACAP3 TMEM88B CDK11B TMEM240 LINC00115 LOC105378948 FNDC10 LINC01342 LOC107985729 SDF4 LOC102724312 ISG15 ATAD3B LINC01128 FAM41C DVL1 CPSF3L TNFRSF4 TTLL10 MRPL20
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC729737 GNB1 MIR6727 LOC105378949 PERM1 PUSL1 LOC148413 LOC100129534 MIR6723 MIR1302-2 LOC107984841 LOC100133331 NADK LOC100130417 C1orf159 MTND2P28 LOC100134822 SKI LOC100288069 WASH7P UBE2J2 MIR6808 MIR200A FAM87B TMEM52 MTND1P23 FAM132A LOC107985728 SLC35E2 MIR429 RNF223 ATAD3A CFAP74 TAS1R3 CDK11B LINC00115 LOC100506504 FNDC10 LINC01342 FAM138A LOC107985729 ATAD3B LOC102725121 CPSF3L TNFRSF4 LOC105378592 LOC105378591 MRPL20 PLEKHN1 ATAD3C OR4F16 MMP23A LOC105378947 MORN1 AURKAIP1 HES4 PRKCZ LOC100287934 MIR6859-1 CPTP MIR6859-2 OR4F29 MIB2 CCNL2 VWA1 B3GALT6 NOC2L LOC100288175 ANKRD65 TTLL10-AS1 KLHL17 AGRN MIR200B CDK11A LOC101928626 SCNN1D SAMD11 MXRA8 MMP23B TNFRSF18 SSU72 SLC35E2B MIR6726 LOC284600 GABRD ACAP3 TMEM88B TMEM240 LOC105378948 DDX11L1 SDF4 FAAP20 OR4F5 LOC102724312 ISG15 CALML6 LINC01128 LOC105378589 FAM41C DVL1 TTLL10 LOC100132287
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss AGRN MIR200B PLEKHN1 FAM132A PERM1 SAMD11 HES4 LOC107985728 MIR429 TNFRSF18 LOC100130417 RNF223 LOC284600 C1orf159 LINC00115 LOC105378948 LINC01342 B3GALT6 NOC2L SDF4 ISG15 LINC01128 FAM41C UBE2J2 TNFRSF4 LOC100288175 TTLL10 MIR200A TTLL10-AS1 KLHL17 FAM87B
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion MIR200B ATAD3C MIR6727 FAM132A PUSL1 LOC148413 SCNN1D AURKAIP1 MXRA8 MMP23B MIR429 TNFRSF18 SSU72 CPTP MIR6726 ATAD3A MIB2 CCNL2 TAS1R3 C1orf159 ACAP3 TMEM88B CDK11B TMEM240 VWA1 FNDC10 LINC01342 B3GALT6 LOC107985729 SDF4 LOC102724312 ATAD3B UBE2J2 DVL1 CPSF3L TNFRSF4 ANKRD65 MIR6808 TTLL10 MIR200A TTLL10-AS1 MRPL20
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain AGRN MIR200B PLEKHN1 MIR6727 FAM132A PERM1 PUSL1 LOC148413 SCNN1D SAMD11 AURKAIP1 HES4 LOC107985728 MXRA8 MIR429 TNFRSF18 LOC100130417 CPTP RNF223 MIR6726 CCNL2 TAS1R3 LOC284600 C1orf159 ACAP3 TMEM88B LOC105378948 LINC01342 B3GALT6 NOC2L SDF4 ISG15 UBE2J2 DVL1 CPSF3L TNFRSF4 LOC100288175 ANKRD65 MIR6808 TTLL10 MIR200A TTLL10-AS1 MRPL20 KLHL17
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion AGRN MIR200B PLEKHN1 C1orf159 LOC105378948 PERM1 LINC01342 SAMD11 NOC2L SDF4 HES4 ISG15 MIR429 TNFRSF4 TNFRSF18 LOC100288175 TTLL10 MIR200A TTLL10-AS1 RNF223 KLHL17
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain MIR200B C1orf159 LOC105378948 FAM132A SCNN1D LINC01342 B3GALT6 SDF4 MIR429 UBE2J2 TNFRSF4 TNFRSF18 TTLL10 MIR200A TTLL10-AS1 RNF223
nsv544947 Chr.1:1070426 - 1306704 on Build GRCh38 Loss MIR200B C1orf159 ACAP3 FAM132A SCNN1D LINC01342 B3GALT6 SDF4 MIR429 UBE2J2 TNFRSF4 TNFRSF18 TTLL10 MIR200A TTLL10-AS1 RNF223 MIR6726
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain MIR200B MIR6727 ACAP3 FAM132A PUSL1 SCNN1D B3GALT6 SDF4 MIR429 UBE2J2 CPSF3L TNFRSF4 TNFRSF18 TTLL10 MIR200A TTLL10-AS1 MIR6726
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TNFRSF4 TNFRSF18 TTLL10 TTLL10-AS1 B3GALT6 SDF4

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