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See other PDPK1 CNV Assays ›
Gene Symbol
PDPK1
Assay Reference Genome
Location

Chr.16:2598580 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03061018_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 5170

Gene Name:

 3-phosphoinositide dependent protein kinase 1

Gene Aliases:

 PDK1, PDPK2, PDPK2P, PRO0461

Location:

 Chr.16:2537964-2603190 on Build GRCh38

Assay Gene Location:

 Within Exon 16
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PDPK1 NM_001261816.1 12 2422 NP_001248745.1
NM_002613.4 14 2633 NP_002604.1
NM_031268.5 11 2252 NP_112558.2
XM_011522521.2 14 6321 XP_011520823.1
XM_011522523.2 11 5945 XP_011520825.1
XM_017023271.1 13 6701 XP_016878760.1
XM_017023272.1 13 3257 XP_016878761.1
XM_017023273.1 13 2966 XP_016878762.1
XM_017023274.1 14 3104 XP_016878763.1
XM_017023275.1 10 6326 XP_016878764.1
XM_017023276.1 10 2570 XP_016878765.1
XM_017023277.1 11 2668 XP_016878766.1
BC033494.1 11 2165 AAH33494.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication PKD1 RNF151 MIR940 SNORD60 LOC652276 LOC107984876 NOXO1 NPRL3 CAPN15 MIR3176 PDIA2 GNG13 NARFL MRPS34 WDR90 RGS11 SNORA64 SNRNP25 PGP MIR6511B1 NME3 MIR3180-5 TPSD1 HBQ1 RHOT2 FAHD1 SNORA78 CACNA1H EME2 DNASE1L2 NTN3 MIR6859-4 LOC106660606 WDR24 DDX11L10 RPL3L WFIKKN1 HAGHL CEMP1 AMDHD2 POLR3K CASKIN1 TMEM204 RHBDL1 HBA2 HBM C16orf91 CCDC78 METTL26 MIR1225 NME4 PTX4 TSC2 SOX8 CLCN7 UNKL SNHG9 ABCA3 HAGH MIR662 LOC105371038 PRR25 MIR5587 TPSB2 PRSS27 BRICD5 MIR3178 GFER TELO2 RNPS1 C1QTNF8 AXIN1 TRAF7 ATP6V0C MPG RPS2 CHTF18 HN1L RAB11FIP3 PDPK1 TBC1D24 ABCA17P MLST8 SSTR5-AS1 ERVK13-1 MCRIP2 MIR4717 MIR4516 C16orf59 TSR3 UBE2I TBL3 HBZ STUB1 JMJD8 TPSAB1 LINC00254 SPSB3 ECI1 HBA1 LMF1 CCDC154 MEIOB FAM234A ZNF598 PIGQ RAB26 SNHG19 FAM173A RAB40C LINC00235 MAPK8IP3 MIR6768 LOC105371045 METRN NTHL1 WASIR2 MIR3177 LOC105371047 PRR35 LOC729652 RHBDF1 RPUSD1 LUC7L TPSG1 TMEM8A LOC105371049 LOC105371046 SNORA10 IGFALS LOC107987233 LOC105371184 NPW SLC9A3R2 CRAMP1 LMF1-AS1 HS3ST6 RPL23AP5 PRSS29P GNPTG MSLN SSTR5 FLJ42627 ARHGDIG E4F1 MIR3677 IFT140 MIR6767 KCTD5 BAIAP3 SYNGR3 NHLRC4 DECR2 LOC100134368 LOC100287175 NDUFB10 MRPL28 FBXL16 NUBP2 LOC101929280 MSRB1 CCNF
esv2760067 Chr.16:2486824 - 2820535 on Build GRCh38 Gain+Loss ERVK13-1 MIR3178 PRSS33 LOC652276 FLJ42627 ATP6V0C PRSS41 TCEB2 KCTD5 SRRM2-AS1 SRRM2 PDPK1 TBC1D24 CEMP1 AMDHD2 PRSS21 PRSS27
dgv2693n100 Chr.16:2593295 - 2676863 on Build GRCh38 Gain ERVK13-1 PDPK1 LOC652276 FLJ42627
esv3637634 Chr.16:2586284 - 2610862 on Build GRCh38 Gain PDPK1 LOC652276
nsv833122 Chr.16:2501717 - 2663937 on Build GRCh38 Loss ERVK13-1 MIR3178 PDPK1 TBC1D24 CEMP1 LOC652276 FLJ42627 AMDHD2 ATP6V0C
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain PKD1 MIR1225 MIR4717 LOC729652 MIR940 MIR4516 C16orf59 SNORD60 LOC652276 TSC2 LOC105371049 ECI1 ABCA3 PGP MIR6511B1 BRICD5 MIR3178 MIR3180-5 RAB26 SNHG19 RNPS1 E4F1 MIR3677 DNASE1L2 TRAF7 MIR6767 ATP6V0C NTN3 LOC106660606 MIR6768 PDPK1 TBC1D24 ABCA17P MLST8 CEMP1 AMDHD2 CASKIN1 CCNF
nsv833123 Chr.16:2561247 - 2764988 on Build GRCh38 Gain+Loss KCTD5 ERVK13-1 SRRM2-AS1 SRRM2 PDPK1 LOC652276 FLJ42627 PRSS27
dgv780e212 Chr.16:2595646 - 2700191 on Build GRCh38 Gain KCTD5 ERVK13-1 PDPK1 LOC652276 FLJ42627

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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