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See other PDPK1 CNV Assays ›
Gene Symbol
PDPK1
Assay Reference Genome
Location

Chr.16:2598580 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03061018_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 5170

Gene Name:

 3-phosphoinositide dependent protein kinase 1

Gene Aliases:

 PDK1, PDPK2, PDPK2P, PRO0461

Location:

 Chr.16:2537964-2603190 on Build GRCh38

Assay Gene Location:

 Within Exon 16
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PDPK1 NM_001261816.1 12 2422 NP_001248745.1
NM_002613.4 14 2633 NP_002604.1
NM_031268.5 11 2252 NP_112558.2
XM_011522521.2 14 6321 XP_011520823.1
XM_011522523.2 11 5945 XP_011520825.1
XM_017023271.1 13 6701 XP_016878760.1
XM_017023272.1 13 3257 XP_016878761.1
XM_017023273.1 13 2966 XP_016878762.1
XM_017023274.1 14 3104 XP_016878763.1
XM_017023275.1 10 6326 XP_016878764.1
XM_017023276.1 10 2570 XP_016878765.1
XM_017023277.1 11 2668 XP_016878766.1
BC033494.1 11 2165 AAH33494.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication MIR5587 MIR940 BAIAP3 LOC107987233 TRAF7 RAB26 FAM173A MIR1225 HBA2 TPSAB1 LMF1 MRPL28 CCNF ABCA3 MIR6859-4 LMF1-AS1 SNHG19 SSTR5 C16orf91 PRSS27 LUC7L HN1L LOC105371045 GNG13 RHBDF1 UBE2I LOC106660606 RPS2 C1QTNF8 HS3ST6 NARFL CCDC78 NPRL3 MIR3176 NOXO1 POLR3K LOC105371038 IGFALS WDR90 DNASE1L2 MCRIP2 MPG MIR3180-5 LOC100134368 PRSS29P LOC105371184 TSC2 GFER MIR3677 METTL26 SNORA64 MIR6768 AMDHD2 MIR4516 EME2 MIR3178 PDIA2 NDUFB10 MRPS34 PKD1 LOC107984876 ZNF598 PGP TPSG1 DECR2 TMEM8A WASIR2 CASKIN1 WDR24 MSLN FBXL16 NME4 SPSB3 CCDC154 CACNA1H SNORA78 RHOT2 RGS11 CLCN7 NTHL1 PDPK1 LINC00254 LOC100287175 MLST8 RNPS1 LOC105371049 FAHD1 PIGQ HAGH PRR25 SNHG9 TSR3 TPSB2 LOC101929280 MSRB1 SSTR5-AS1 BRICD5 MIR662 HBM KCTD5 SOX8 NTN3 E4F1 LOC105371047 MIR4717 TBL3 RHBDL1 HBZ HAGHL SYNGR3 LINC00235 RNF151 NHLRC4 ARHGDIG LOC105371046 WFIKKN1 RPUSD1 C16orf59 LOC652276 TMEM204 ATP6V0C JMJD8 ERVK13-1 MIR6767 DDX11L10 NME3 CRAMP1 GNPTG FAM234A MEIOB RAB40C RPL3L TPSD1 CEMP1 ABCA17P CAPN15 LOC729652 NPW SNORD60 CHTF18 IFT140 METRN AXIN1 UNKL RPL23AP5 PTX4 HBA1 SNRNP25 RAB11FIP3 TBC1D24 PRR35 MAPK8IP3 MIR6511B1 SNORA10 MIR3177 FLJ42627 ECI1 SLC9A3R2 HBQ1 STUB1 TELO2 NUBP2
esv2760067 Chr.16:2486824 - 2820535 on Build GRCh38 Gain+Loss MIR3178 TBC1D24 PRSS33 SRRM2 PRSS21 PRSS41 CEMP1 KCTD5 PDPK1 FLJ42627 TCEB2 LOC652276 ATP6V0C PRSS27 ERVK13-1 SRRM2-AS1 AMDHD2
dgv2693n100 Chr.16:2593295 - 2676863 on Build GRCh38 Gain PDPK1 FLJ42627 LOC652276 ERVK13-1
esv3637634 Chr.16:2586284 - 2610862 on Build GRCh38 Gain PDPK1 LOC652276
nsv833122 Chr.16:2501717 - 2663937 on Build GRCh38 Loss MIR3178 PDPK1 FLJ42627 LOC652276 TBC1D24 ATP6V0C ERVK13-1 CEMP1 AMDHD2
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain MIR4516 MIR3178 MIR940 BRICD5 TRAF7 RAB26 PKD1 MIR1225 CEMP1 ABCA17P PGP CCNF ABCA3 LOC729652 SNORD60 SNHG19 NTN3 E4F1 CASKIN1 MIR4717 LOC106660606 TBC1D24 MIR6511B1 PDPK1 DNASE1L2 C16orf59 ECI1 MIR3180-5 LOC652276 ATP6V0C MLST8 RNPS1 LOC105371049 MIR6767 TSC2 MIR3677 MIR6768 AMDHD2
nsv833123 Chr.16:2561247 - 2764988 on Build GRCh38 Gain+Loss KCTD5 PDPK1 FLJ42627 LOC652276 SRRM2 PRSS27 ERVK13-1 SRRM2-AS1
dgv780e212 Chr.16:2595646 - 2700191 on Build GRCh38 Gain KCTD5 PDPK1 FLJ42627 LOC652276 ERVK13-1

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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