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See other CASKIN1 CNV Assays ›
Gene Symbol
CASKIN1
Assay Reference Genome
Location

Chr.16:2178145 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03073073_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57524

Gene Name:

 CASK interacting protein 1

Gene Aliases:

 ANKS5A

Location:

 Chr.16:2177183-2196464 on Build GRCh38

Assay Gene Location:

 Within Exon 20
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASKIN1 NM_020764.3 20 4733 NP_065815.1
AB037727.1 12 3870 BAA92544.1
AF451977.1 20 4799 AAL49758.1
BC042011.1 10 1644 AAH42011.1

Target Gene Details

Entrez Gene ID:

 84231

Gene Name:

 TNF receptor associated factor 7

Gene Aliases:

 RFWD1, RNF119

Location:

 Chr.16:2155752-2178129 on Build GRCh38

Assay Gene Location:

 Overlaps - Exon 21
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRAF7 NM_032271.2 NP_115647.2
XM_005255627.4 XP_005255684.1
XM_011522700.1 XP_011521002.1
AL136921.1 CAB66855.1
AW245178.1
AY569455.1 AAS68363.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication NUBP2 IGFALS TSR3 MIR6767 LINC00254 RGS11 ABCA17P C16orf59 AMDHD2 SNORA78 RHBDF1 LOC107984876 ATP6V0C NME4 ECI1 PRSS27 MSLN MIR6511B1 HAGHL PDPK1 CASKIN1 CAPN15 MIR5587 MLST8 RPL23AP5 LMF1-AS1 BRICD5 SYNGR3 TPSB2 NPW AXIN1 METTL26 LOC105371049 MRPL28 CACNA1H MIR4717 HBA2 MIR3180-5 RAB40C HBQ1 NOXO1 NME3 MIR1225 PDIA2 RPUSD1 MPG LOC100287175 ARHGDIG FLJ42627 GNG13 GNPTG JMJD8 LOC105371045 LOC101929280 TMEM8A BAIAP3 TPSG1 NARFL MEIOB SSTR5 LOC105371046 SNORD60 SNHG19 LINC00235 C16orf91 SOX8 EME2 SLC9A3R2 LOC105371038 SNORA64 RNF151 RPL3L LOC107987233 PRR25 IFT140 ERVK13-1 LOC652276 RHOT2 FAM234A TSC2 CCDC154 PIGQ POLR3K SNORA10 HBZ MIR3176 WFIKKN1 CHTF18 TMEM204 MIR6768 SSTR5-AS1 UBE2I HBM NDUFB10 CRAMP1 SNHG9 RHBDL1 MIR6859-4 MCRIP2 LMF1 TBL3 WDR24 MRPS34 MIR940 LOC729652 RAB11FIP3 NHLRC4 MIR662 MIR4516 KCTD5 METRN TELO2 FBXL16 PTX4 WASIR2 ABCA3 E4F1 CEMP1 TBC1D24 PRR35 UNKL RPS2 HN1L C1QTNF8 SNRNP25 HS3ST6 MIR3177 NTHL1 DNASE1L2 ZNF598 CLCN7 RAB26 LOC106660606 TRAF7 LUC7L PRSS29P PKD1 SPSB3 WDR90 LOC105371184 LOC100134368 FAM173A MAPK8IP3 CCNF STUB1 MIR3677 MSRB1 NTN3 RNPS1 TPSD1 PGP LOC105371047 DDX11L10 GFER NPRL3 CCDC78 MIR3178 HAGH FAHD1 DECR2 TPSAB1 HBA1
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss DNASE1L2 ZNF598 RAB26 LOC106660606 TRAF7 PKD1 TBL3 ECI1 MIR940 MIR6511B1 SNORD60 CASKIN1 MIR4516 SNHG19 MLST8 SLC9A3R2 MIR3677 BRICD5 SYNGR3 NPW LOC105371049 ABCA3 RNPS1 E4F1 MIR4717 PGP MIR3180-5 GFER NOXO1 TSC2 MIR1225 NTHL1
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss DNASE1L2 BRICD5 RAB26 LOC105371049 TRAF7 E4F1 PGP PKD1 MIR3180-5 ECI1 TSC2 MIR6511B1 SNORD60 CASKIN1 MIR4516 SNHG19 MIR1225 MLST8
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss MIR3677 DNASE1L2 BRICD5 RAB26 LOC106660606 TRAF7 RNPS1 E4F1 PGP ECI1 MIR940 SNORD60 CASKIN1 SNHG19 MLST8
nsv457349 Chr.16:2055054 - 2200730 on Build GRCh38 Loss MIR3180-5 RAB26 TSC2 LOC105371049 MIR6511B1 SNORD60 TRAF7 CASKIN1 MIR4516 SNHG19 MIR1225 PKD1
nsv827511 Chr.16:2177743 - 2178224 on Build GRCh38 Gain TRAF7 CASKIN1
dgv456n67 Chr.16:2175295 - 2181915 on Build GRCh38 Gain TRAF7 CASKIN1
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss MIR3677 DNASE1L2 BRICD5 ECI1 MIR940 LOC106660606 TRAF7 CASKIN1 RNPS1 E4F1 MLST8 PGP
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain DNASE1L2 MIR6767 RAB26 LOC106660606 TRAF7 MIR6768 ABCA17P C16orf59 AMDHD2 PKD1 ATP6V0C ECI1 CCNF MIR940 LOC729652 MIR6511B1 SNORD60 PDPK1 CASKIN1 MIR4516 SNHG19 MLST8 MIR3677 NTN3 BRICD5 LOC105371049 ABCA3 RNPS1 E4F1 MIR4717 CEMP1 TBC1D24 PGP MIR3180-5 LOC652276 TSC2 MIR3178 MIR1225
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion MIR3677 DNASE1L2 BRICD5 RAB26 ABCA3 LOC106660606 TRAF7 RNPS1 E4F1 MIR4717 PGP ECI1 MIR940 SNORD60 CASKIN1 SNHG19 MLST8

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