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See other CASKIN1 CNV Assays ›
Gene Symbol
CASKIN1
Assay Reference Genome
Location

Chr.16:2178145 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03073073_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 57524

Gene Name:

 CASK interacting protein 1

Gene Aliases:

 ANKS5A

Location:

 Chr.16:2177183-2196464 on Build GRCh38

Assay Gene Location:

 Within Exon 20
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASKIN1 NM_020764.3 20 4733 NP_065815.1
AB037727.1 12 3870 BAA92544.1
AF451977.1 20 4799 AAL49758.1
BC042011.1 10 1644 AAH42011.1

Target Gene Details

Entrez Gene ID:

 84231

Gene Name:

 TNF receptor associated factor 7

Gene Aliases:

 RFWD1, RNF119

Location:

 Chr.16:2155752-2178129 on Build GRCh38

Assay Gene Location:

 Overlaps - Exon 21
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRAF7 NM_032271.2 NP_115647.2
XM_005255627.4 XP_005255684.1
XM_011522700.1 XP_011521002.1
AL136921.1 CAB66855.1
AW245178.1
AY569455.1 AAS68363.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication TRAF7 LOC101929280 LOC107984876 RHBDL1 TPSD1 PDIA2 NME4 C1QTNF8 HN1L SNHG19 PDPK1 MAPK8IP3 RPUSD1 MCRIP2 BAIAP3 PRR25 MIR6768 BRICD5 MIR3178 CAPN15 MEIOB LMF1-AS1 ATP6V0C TMEM204 WFIKKN1 MIR940 IFT140 LOC729652 TPSAB1 LOC100287175 LINC00254 NARFL ABCA3 RAB11FIP3 LOC105371049 RAB26 RNF151 MIR4717 NPRL3 MIR662 TBL3 MIR6859-4 CACNA1H HBA2 TMEM8A SOX8 PTX4 HS3ST6 FAM173A GNPTG CCDC78 NTHL1 HBQ1 PRR35 TPSB2 NTN3 RGS11 LOC105371047 WDR24 RHBDF1 MIR3677 HBZ LOC105371184 LOC106660606 PRSS29P SSTR5-AS1 LOC652276 DNASE1L2 JMJD8 MRPS34 GNG13 FLJ42627 E4F1 MRPL28 EME2 NOXO1 PKD1 METRN MIR6767 PIGQ NUBP2 TBC1D24 MPG POLR3K MIR3177 DECR2 LOC107987233 RPS2 MIR3180-5 LMF1 SNORA10 GFER RPL3L RPL23AP5 AMDHD2 MIR5587 CHTF18 PRSS27 SNORA78 TELO2 MIR3176 CLCN7 CCNF HAGHL ZNF598 SLC9A3R2 ERVK13-1 UNKL HAGH CRAMP1 LOC105371046 PGP MIR1225 CASKIN1 FAM234A MIR4516 CCDC154 DDX11L10 ABCA17P C16orf91 WDR90 LOC100134368 MIR6511B1 RAB40C TPSG1 CEMP1 STUB1 FAHD1 LINC00235 SNORA64 MLST8 RHOT2 HBA1 TSC2 LOC105371038 NDUFB10 NPW NHLRC4 SYNGR3 METTL26 IGFALS NME3 FBXL16 SSTR5 RNPS1 SNHG9 ECI1 WASIR2 LOC105371045 SNORD60 TSR3 C16orf59 SNRNP25 KCTD5 AXIN1 MSLN SPSB3 UBE2I ARHGDIG LUC7L MSRB1 HBM
dgv4859n54 Chr.16:1971892 - 2264400 on Build GRCh38 Loss TRAF7 MIR6511B1 PKD1 SNHG19 NTHL1 MLST8 TSC2 BRICD5 NPW MIR3180-5 SYNGR3 GFER RNPS1 ECI1 SNORD60 ZNF598 LOC105371049 SLC9A3R2 RAB26 DNASE1L2 PGP MIR1225 TBL3 CASKIN1 E4F1 MIR4516 NOXO1
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss TRAF7 ECI1 MIR6511B1 SNORD60 PKD1 SNHG19 LOC105371049 MLST8 TSC2 RAB26 DNASE1L2 BRICD5 PGP MIR3180-5 MIR1225 CASKIN1 E4F1 MIR4516
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss TRAF7 MIR3677 ECI1 SNORD60 LOC106660606 SNHG19 MLST8 RAB26 DNASE1L2 BRICD5 PGP CASKIN1 E4F1 RNPS1 MIR940
nsv571190 Chr.16:2055054 - 2200730 on Build GRCh38 Loss TRAF7 TSC2 MIR6511B1 RAB26 SNORD60 PKD1 MIR3180-5 MIR1225 CASKIN1 SNHG19 LOC105371049 MIR4516
nsv827511 Chr.16:2177743 - 2178224 on Build GRCh38 Gain TRAF7 CASKIN1
dgv456n67 Chr.16:2175295 - 2181915 on Build GRCh38 Gain TRAF7 CASKIN1
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain TRAF7 ABCA17P MIR6511B1 CEMP1 PKD1 SNHG19 PDPK1 MIR6767 TBC1D24 MLST8 TSC2 NTN3 MIR6768 BRICD5 MIR3178 MIR3180-5 ATP6V0C AMDHD2 RNPS1 MIR940 LOC729652 MIR3677 ECI1 SNORD60 LOC106660606 C16orf59 ABCA3 CCNF LOC105371049 LOC652276 RAB26 MIR4717 DNASE1L2 PGP MIR1225 CASKIN1 E4F1 MIR4516
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss TRAF7 MIR3677 ECI1 DNASE1L2 BRICD5 LOC106660606 PGP CASKIN1 E4F1 RNPS1 MLST8 MIR940
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion TRAF7 MIR3677 ECI1 SNORD60 LOC106660606 SNHG19 ABCA3 MLST8 RAB26 MIR4717 DNASE1L2 BRICD5 PGP CASKIN1 E4F1 RNPS1 MIR940

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