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See other EGFL8 CNV Assays ›
Gene Symbol
EGFL8
Assay Reference Genome
Location

Chr.6:32167119 on build GRCh38
Cytoband
6p21.32
Assay ID Hs03083993_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 80864

Gene Name:

 EGF like domain multiple 8

Gene Aliases:

 C6orf8, NG3

Location:

 Chr.6:32164605-32168285 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 5 - Exon 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
EGFL8 NM_030652.3 NP_085155.1
NR_037860.1
AB190520.1 BAD51398.1
AK126457.1
AY358139.1 AAQ88506.1
BC035574.1 AAH35574.1
BC052591.1 AAH52591.1

Target Gene Details

Entrez Gene ID:

 100532746

Gene Name:

 PPT2-EGFL8 readthrough (NMD candidate)

Gene Aliases:

 -

Location:

 Chr.6:32153999-32168285 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 12 - Exon 13
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PPT2-EGFL8 NR_037861.1
AB209572.1 BAD92809.1
AF020544.1 AAB80731.1
AK307427.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830629 Chr.6:32076201 - 32222010 on Build GRCh38 Loss LOC100507547 EGFL8 RNF5 PPT2 GPSM3 PBX2 FKBPL PPT2-EGFL8 AGER TNXB ATF6B MIR6833 AGPAT1 MIR6721 PRRT1 NOTCH4
dgv10472n54 Chr.6:31985690 - 32812026 on Build GRCh38 Loss HLA-DRA LOC101929163 HLA-DQB1 LOC100507547 C6orf10 RNF5 PPT2 GPSM3 PBX2 HLA-DQA2 HLA-DQB1-AS1 HLA-DQB2 C4A TNXB ATF6B MIR6833 BTNL2 AGPAT1 MIR6721 NOTCH4 HLA-DRB6 HLA-DRB5 CYP21A1P EGFL8 CYP21A2 MIR3135B FKBPL C4B PPT2-EGFL8 AGER HLA-DQA1 TNXA HLA-DRB1 HCG23 PRRT1
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss LOC101929163 NEU1 PPT2 GPSM3 PBX2 CFB C2 HLA-DQB1-AS1 TNXB ATF6B MIR6833 BTNL2 AGPAT1 MIR6721 EHMT2 HLA-DRB6 STK19 CYP21A1P HSPA1B SLC44A4 C6orf48 NELFE HSPA1A SKIV2L SNORD52 HLA-DRA HLA-DQB1 LOC100507547 MIR1236 C6orf10 RNF5 C4A DXO C2-AS1 NOTCH4 HLA-DRB5 EGFL8 SNORD48 CYP21A2 FKBPL ZBTB12 C4B PPT2-EGFL8 AGER HLA-DQA1 TNXA HLA-DRB1 HCG23 PRRT1
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss LOC100507547 MIR1236 RNF5 PPT2 GPSM3 PBX2 CFB C2 C4A TNXB ATF6B MIR6833 AGPAT1 MIR6721 DXO C2-AS1 NOTCH4 STK19 CYP21A1P EGFL8 CYP21A2 FKBPL NELFE C4B PPT2-EGFL8 AGER TNXA SKIV2L PRRT1
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion VWA7 LOC101929163 CSNK2B NEU1 PPT2 GPSM3 PBX2 CFB C2 LOC100287329 LTA TNXB AIF1 ATF6B MIR6833 BTNL2 AGPAT1 SNORA38 MIR6721 DDX39B-AS1 CLIC1 EHMT2 HLA-DRB6 STK19 CYP21A1P HSPA1B SLC44A4 C6orf48 NELFE HSPA1L HCG26 DDAH2 BAG6 HSPA1A ATP6V1G2-DDX39B C6orf25 MSH5-SAPCD1 ATP6V1G2 SKIV2L SNORD52 LST1 HLA-DRA NCR3 SNORD84 LOC100507547 MIR1236 C6orf10 RNF5 LTB MIR6832 LY6G5B VARS LY6G6F SNORD117 C4A MICB SAPCD1-AS1 LY6G6E DDX39B LSM2 DXO C2-AS1 NOTCH4 LY6G5C NFKBIL1 APOM HLA-DRB5 HCP5 PRRC2A LOC102725068 EGFL8 SNORD48 CYP21A2 FKBPL SAPCD1 ZBTB12 LY6G6D MSH5 C4B PPT2-EGFL8 LY6G6C ABHD16A C6orf47 AGER MCCD1 TNXA TNF HLA-DRB1 MIR4646 HCG23 PRRT1 GPANK1
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion CUTA HLA-DOB LOC101929163 NEU1 GPSM3 C2 LTA RXRB HLA-DPB1 TNXB AIF1 ATF6B MIR6833 BTNL2 AGPAT1 MIR6721 DDX39B-AS1 CLIC1 HLA-DRB6 STK19 RING1 SYNGAP1 HSD17B8 CYP21A1P PPP1R2P1 MIR3135B NELFE HSPA1L MIR5004 RPS18 BAG6 HLA-DPA1 ATP6V1G2-DDX39B C6orf25 HLA-DMB SNORD52 HLA-DRA NCR3 C6orf10 LTB MIR6832 VARS PFDN6 TAP1 HLA-DQB2 C4A DDX39B TAP2 DXO SLC39A7 HCP5 LOC102725068 EGFL8 PHF1 HLA-DPB2 SAPCD1 MSH5 C4B MIR219A1 ZBTB9 C6orf47 HLA-DQA1 TNF HLA-DRB1 PSMB8-AS1 COL11A2 HCG23 PRRT1 GPANK1 HCG24 VWA7 CSNK2B MIR6834 DAXX PPT2 PBX2 TAPBP CFB HLA-DQA2 HLA-DMA HLA-DQB1-AS1 LOC100287329 HCG25 WDR46 PSMB8 SNORA38 BRD2 EHMT2 HSPA1B SLC44A4 C6orf48 B3GALT4 HLA-DOA HCG26 DDAH2 VPS52 HSPA1A MSH5-SAPCD1 ATP6V1G2 SKIV2L MIR6873 LST1 HLA-DQB1 SNORD84 ZBTB22 LOC100507547 MIR1236 RNF5 LY6G5B LY6G6F SNORD117 MICB SAPCD1-AS1 LY6G6E LSM2 C2-AS1 NOTCH4 LY6G5C NFKBIL1 APOM HLA-DRB5 PRRC2A SNORD48 CYP21A2 LOC100294145 FKBPL ZBTB12 LY6G6D KIFC1 PPT2-EGFL8 LY6G6C ABHD16A RGL2 AGER MCCD1 TNXA MIR4646 PSMB9
nsv602104 Chr.6:32096949 - 32203906 on Build GRCh38 Loss LOC100507547 EGFL8 RNF5 PPT2 GPSM3 PBX2 FKBPL PPT2-EGFL8 AGER TNXB ATF6B MIR6833 AGPAT1 MIR6721 PRRT1 NOTCH4
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion CUTA HLA-DOB LOC101929163 NEU1 GPSM3 C2 LTA RXRB HLA-DPB1 TNXB AIF1 ATF6B MIR6833 BTNL2 AGPAT1 MIR6721 DDX39B-AS1 CLIC1 HLA-DRB6 STK19 RING1 SYNGAP1 HSD17B8 CYP21A1P PPP1R2P1 MIR3135B NELFE HSPA1L MIR5004 RPS18 BAG6 HLA-DPA1 ATP6V1G2-DDX39B C6orf25 HLA-DMB SNORD52 HLA-DRA NCR3 C6orf10 LTB MIR6832 VARS PFDN6 TAP1 HLA-DQB2 C4A DDX39B TAP2 DXO SLC39A7 HCP5 LOC102725068 EGFL8 PHF1 HLA-DPB2 SAPCD1 MSH5 C4B MIR219A1 ZBTB9 C6orf47 HLA-DQA1 TNF HLA-DRB1 PSMB8-AS1 COL11A2 HCG23 PRRT1 GPANK1 HCG24 VWA7 CSNK2B MIR6834 DAXX PPT2 PBX2 TAPBP CFB HLA-DQA2 HLA-DMA HLA-DQB1-AS1 LOC100287329 HCG25 WDR46 PSMB8 SNORA38 BRD2 EHMT2 HSPA1B SLC44A4 C6orf48 B3GALT4 HLA-DOA HCG26 DDAH2 VPS52 HSPA1A MSH5-SAPCD1 ATP6V1G2 SKIV2L MIR6873 LST1 HLA-DQB1 SNORD84 ZBTB22 LOC100507547 MIR1236 RNF5 LY6G5B LY6G6F SNORD117 MICB SAPCD1-AS1 LY6G6E LSM2 C2-AS1 NOTCH4 LY6G5C NFKBIL1 APOM HLA-DRB5 PRRC2A SNORD48 CYP21A2 LOC100294145 FKBPL ZBTB12 LY6G6D KIFC1 PPT2-EGFL8 LY6G6C ABHD16A RGL2 AGER MCCD1 TNXA MIR4646 PSMB9
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss VWA7 LOC101929163 CSNK2B NEU1 PPT2 GPSM3 PBX2 CFB HLA-B C2 LOC100287329 LTA TNXB AIF1 ATF6B MIR6833 MICA BTNL2 AGPAT1 SNORA38 MIR6721 DDX39B-AS1 CLIC1 EHMT2 STK19 CYP21A1P HSPA1B SLC44A4 C6orf48 NELFE HSPA1L HCG26 DDAH2 BAG6 HSPA1A ATP6V1G2-DDX39B C6orf25 MSH5-SAPCD1 ATP6V1G2 SKIV2L SNORD52 LST1 HLA-DRA NCR3 SNORD84 LOC100507547 MIR1236 C6orf10 RNF5 LTB MIR6832 LY6G5B VARS LY6G6F SNORD117 C4A MICB SAPCD1-AS1 LY6G6E DDX39B LSM2 DXO C2-AS1 NOTCH4 LY6G5C NFKBIL1 APOM HCP5 PRRC2A LOC102725068 MIR6891 EGFL8 SNORD48 CYP21A2 FKBPL SAPCD1 ZBTB12 LY6G6D MSH5 C4B PPT2-EGFL8 LY6G6C ABHD16A C6orf47 AGER MCCD1 TNXA TNF MIR4646 HCG23 PRRT1 GPANK1

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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