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See other SMCO2 CNV Assays ›
Gene Symbol
SMCO2
Assay Reference Genome
Location

Chr.12:27496182 on build GRCh38
Cytoband
12p11.23
Assay ID Hs03293873_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 341346

Gene Name:

 single-pass membrane protein with coiled-coil domains 2

Gene Aliases:

 C12orf70

Location:

 Chr.12:27446482-27506911 on Build GRCh38

Assay Gene Location:

 Within Intron 9
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SMCO2 NM_001145010.1 NP_001138482.1
XM_011520634.2 XP_011518936.1
XM_011520635.2 XP_011518937.1
XM_017019254.1 XP_016874743.1
XM_017019255.1 XP_016874744.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv3584649 Chr.12:27494808 - 27498429 on Build GRCh38 Loss SMCO2
dgv2417n54 Chr.12:27068022 - 27638988 on Build GRCh38 Gain ARNTL2 C12orf71 PPFIBP1 STK38L ARNTL2-AS1 SMCO2
esv2672053 Chr.12:27495209 - 27502230 on Build GRCh38 Deletion SMCO2
dgv36n17 Chr.12:27486051 - 27506870 on Build GRCh38 Loss SMCO2
nsv437732 Chr.12:27475809 - 27502467 on Build GRCh38 Loss SMCO2
dgv271e199 Chr.12:27089700 - 27631451 on Build GRCh38 Deletion ARNTL2 PPFIBP1 STK38L ARNTL2-AS1 SMCO2
nsv8931 Chr.12:27495037 - 27502335 on Build GRCh38 Loss SMCO2
esv3628941 Chr.12:27495241 - 27502269 on Build GRCh38 Loss SMCO2
dgv1407n100 Chr.12:27493041 - 27506809 on Build GRCh38 Loss SMCO2
nsv983483 Chr.12:27494958 - 27501970 on Build GRCh38 Deletion SMCO2
esv2745664 Chr.12:27017516 - 27820117 on Build GRCh38 Deletion ARNTL2 KLHL42 MED21 REP15 C12orf71 PPFIBP1 STK38L ARNTL2-AS1 MANSC4 SMCO2 MRPS35
dgv2419n54 Chr.12:27495478 - 27502164 on Build GRCh38 Loss SMCO2
dgv469e212 Chr.12:27493218 - 27498416 on Build GRCh38 Loss SMCO2
esv3628940 Chr.12:27451350 - 27631744 on Build GRCh38 Gain PPFIBP1 SMCO2
dgv2418n54 Chr.12:27493793 - 27504092 on Build GRCh38 Loss SMCO2
nsv1052330 Chr.12:27482662 - 27506809 on Build GRCh38 Gain SMCO2
esv3580202 Chr.12:27494795 - 27498337 on Build GRCh38 Loss SMCO2
nsv514659 Chr.12:27495406 - 27502170 on Build GRCh38 Loss SMCO2
dgv1406n100 Chr.12:27128236 - 27640822 on Build GRCh38 Gain ARNTL2 PPFIBP1 STK38L ARNTL2-AS1 SMCO2
esv28340 Chr.12:27495192 - 27502248 on Build GRCh38 Loss SMCO2
nsv521872 Chr.12:27114021 - 27635541 on Build GRCh38 Gain ARNTL2 PPFIBP1 STK38L ARNTL2-AS1 SMCO2
nsv438199 Chr.12:27495777 - 27500838 on Build GRCh38 Loss SMCO2
esv3548928 Chr.12:27495068 - 27502567 on Build GRCh38 Deletion SMCO2
nsv436825 Chr.12:27135971 - 27642579 on Build GRCh38 Insertion ARNTL2 PPFIBP1 STK38L ARNTL2-AS1 SMCO2
dgv24e203 Chr.12:27487981 - 27506821 on Build GRCh38 Loss SMCO2
nsv651 Chr.12:27490207 - 27520451 on Build GRCh38 Deletion SMCO2
esv2745668 Chr.12:27495215 - 27502220 on Build GRCh38 Deletion SMCO2

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More Information


Additional Information:

For this assay, SNP(s) [rs117798780] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

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