Genomic Map
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Target Gene Details
Entrez Gene ID: | 341346 |
Gene Name: | single-pass membrane protein with coiled-coil domains 2 |
Gene Aliases: |
C12orf70 |
Location: |
Chr.12:27446482-27506911 on Build GRCh38 |
Assay Gene Location: | Within Intron 7 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| SMCO2 | NM_001145010.1 | NP_001138482.1 | ||
| XM_011520634.2 | XP_011518936.1 | |||
| XM_011520635.2 | XP_011518937.1 | |||
| XM_011520636.2 | XP_011518938.1 | |||
| XM_017019254.1 | XP_016874743.1 | |||
| XM_017019255.1 | XP_016874744.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv1052330 | Chr.12:27482662 - 27506809 on Build GRCh38 | Gain |
 SMCO2
|
| dgv1406n100 | Chr.12:27128236 - 27640822 on Build GRCh38 | Gain |
SMCO2
ARNTL2
PPFIBP1
ARNTL2-AS1
STK38L
|
| dgv2417n54 | Chr.12:27068022 - 27638988 on Build GRCh38 | Gain |
SMCO2
ARNTL2
PPFIBP1
ARNTL2-AS1
C12orf71
STK38L
|
| nsv436825 | Chr.12:27135971 - 27642579 on Build GRCh38 | Insertion |
SMCO2
ARNTL2
PPFIBP1
ARNTL2-AS1
STK38L
|
| dgv24e203 | Chr.12:27487981 - 27506821 on Build GRCh38 | Loss |
SMCO2
|
| dgv36n17 | Chr.12:27486051 - 27506870 on Build GRCh38 | Loss |
SMCO2
|
| esv2745664 | Chr.12:27017516 - 27820117 on Build GRCh38 | Deletion |
KLHL42
SMCO2
ARNTL2
PPFIBP1
MANSC4
MRPS35
ARNTL2-AS1
MED21
C12orf71
REP15
STK38L
|
| nsv437732 | Chr.12:27475809 - 27502467 on Build GRCh38 | Loss |
SMCO2
|
| nsv438198 | Chr.12:27488540 - 27489609 on Build GRCh38 | Loss |
SMCO2
|
| esv3628940 | Chr.12:27451350 - 27631744 on Build GRCh38 | Gain |
SMCO2
PPFIBP1
|
| nsv521872 | Chr.12:27114021 - 27635541 on Build GRCh38 | Gain |
SMCO2
ARNTL2
PPFIBP1
ARNTL2-AS1
STK38L
|
| dgv271e199 | Chr.12:27089700 - 27631451 on Build GRCh38 | Deletion |
SMCO2
ARNTL2
PPFIBP1
ARNTL2-AS1
STK38L
|
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Additional Information:
For this assay, SNP(s) [rs78109269] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic
Intronic
Non-exonic
DGV Variation
|
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