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See other SSU72 CNV Assays ›
Gene Symbol
SSU72
Assay Reference Genome
Location

Chr.1:1542860 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03327930_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 29101

Gene Name:

 SSU72 homolog, RNA polymerase II CTD phosphatase

Gene Aliases:

 HSPC182, PNAS-120

Location:

 Chr.1:1541673-1574882 on Build GRCh38

Assay Gene Location:

 Within Intron 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SSU72 NM_014188.2 NP_054907.1
AF161530.1 AAF29145.1
AF277178.1 AAK07538.1
AJ276409.1 CAC81713.1
AK001809.1 BAA91921.1
AK127149.1
BC008070.2 AAH08070.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv545000 Chr.1:1421170 - 1573654 on Build GRCh38 Loss TMEM240 ATAD3B LOC102724312 ATAD3C ANKRD65 TMEM88B LOC107985729 ATAD3A SSU72 VWA1
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss TNFRSF18 MIR200A TMEM88B C1orf159 LOC284600 MMP23B TMEM240 SLC35E2 ATAD3B LOC100287934 MIR429 ATAD3C HES4 PLEKHN1 MIR6727 FAM87B LOC100288175 KLHL17 CDK11B RNF223 TAS1R3 MIR6808 LOC100130417 MXRA8 LINC01128 LINC01342 NOC2L AURKAIP1 LOC102724312 MIR200B ANKRD65 LOC107985729 LOC107985728 ATAD3A MMP23A TNFRSF4 FAM132A FAM41C MIR6726 SCNN1D SLC35E2B LOC100288069 ISG15 DVL1 TTLL10 MIB2 MRPL20 NADK AGRN FNDC10 SSU72 VWA1 CDK11A UBE2J2 CPSF3L LOC105378948 SDF4 CCNL2 LOC148413 LINC00115 PUSL1 PERM1 SAMD11 TTLL10-AS1 B3GALT6 CPTP ACAP3
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss MIR200A TMEM88B LOC100506504 GABRD C1orf159 MMP23B TMEM240 LOC100287934 LOC729737 LOC105378589 MIR6727 FAM87B KLHL17 GNB1 CDK11B TAS1R3 MTND1P23 LOC100130417 MXRA8 LINC01128 MIR6723 NOC2L MIR1302-2 AURKAIP1 ANKRD65 LOC107985728 ATAD3A OR4F29 TNFRSF4 FAM132A MIR6726 DDX11L1 LOC100288069 DVL1 TTLL10 OR4F16 NADK FNDC10 CDK11A UBE2J2 OR4F5 SKI CCNL2 PERM1 PRKCZ SAMD11 MORN1 CPTP TNFRSF18 LOC105378949 LOC284600 CALML6 LOC102725121 SLC35E2 ATAD3B MIR429 ATAD3C HES4 PLEKHN1 LOC105378591 LOC100288175 FAM138A RNF223 CFAP74 MIR6808 LINC01342 LOC105378947 LOC102724312 MIR200B LOC105378592 MTND2P28 LOC107985729 MMP23A FAM41C LOC100129534 SCNN1D SLC35E2B TMEM52 LOC107984841 ISG15 MIB2 MRPL20 AGRN SSU72 VWA1 FAAP20 MIR6859-2 CPSF3L LOC100133331 LOC100134822 LOC101928626 WASH7P LOC105378948 SDF4 LOC148413 LINC00115 PUSL1 MIR6859-1 TTLL10-AS1 B3GALT6 ACAP3 LOC100132287
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion TNFRSF18 MIR200A TNFRSF4 TMEM88B FAM132A C1orf159 MIR6726 SCNN1D MMP23B TMEM240 ATAD3B MIR429 DVL1 ATAD3C TTLL10 MIR6727 MIB2 MRPL20 FNDC10 SSU72 VWA1 UBE2J2 CDK11B CPSF3L TAS1R3 MIR6808 MXRA8 LINC01342 SDF4 CCNL2 LOC148413 PUSL1 AURKAIP1 LOC102724312 MIR200B ANKRD65 LOC107985729 TTLL10-AS1 ATAD3A B3GALT6 CPTP ACAP3
nsv1011818 Chr.1:1394332 - 1575421 on Build GRCh38 Gain TMEM88B CCNL2 LOC148413 TMEM240 ATAD3B LOC102724312 ATAD3C ANKRD65 LOC107985729 ATAD3A MRPL20 SSU72 VWA1
esv2758913 Chr.1:1389149 - 2092899 on Build GRCh38 Gain+Loss TMEM88B GABRD LOC105378949 MMP23B SLC35E2B TMEM52 CALML6 TMEM240 SLC35E2 ATAD3B ATAD3C LOC105378589 MIB2 LOC105378591 MRPL20 NADK FNDC10 SSU72 VWA1 GNB1 CDK11A CDK11B CFAP74 CCNL2 LOC148413 PRKCZ LOC102724312 ANKRD65 LOC107985729 ATAD3A MMP23A

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

protein phosphatase

Gene Ontology Categories:

Function(s) Process(es)


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