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See other SSU72 CNV Assays ›
Gene Symbol
SSU72
Assay Reference Genome
Location

Chr.1:1556805 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03332263_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 29101

Gene Name:

 SSU72 homolog, RNA polymerase II CTD phosphatase

Gene Aliases:

 HSPC182, PNAS-120

Location:

 Chr.1:1541673-1574882 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SSU72 NM_014188.2 NP_054907.1
AF161530.1 AAF29145.1
AF277178.1 AAK07538.1
AJ276409.1 CAC81713.1
AK001809.1 BAA91921.1
AK297505.1
AK310067.1
BC008070.2 AAH08070.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv545000 Chr.1:1421170 - 1573654 on Build GRCh38 Loss ANKRD65 ATAD3A LOC107985729 TMEM88B ATAD3C TMEM240 VWA1 LOC102724312 ATAD3B SSU72
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss MXRA8 KLHL17 MIB2 LOC100130417 DVL1 SLC35E2 MIR6808 MIR6727 MIR200B MRPL20 VWA1 MMP23A TAS1R3 CCNL2 FNDC10 LOC105378948 HES4 LOC100287934 FAM132A B3GALT6 ANKRD65 LINC01342 LOC284600 TTLL10 NADK SCNN1D AGRN CDK11A LOC107985728 LOC107985729 CDK11B LOC148413 FAM87B TNFRSF4 LOC102724312 LINC00115 TMEM88B MIR200A TMEM240 MMP23B LOC100288175 SLC35E2B SSU72 TNFRSF18 AURKAIP1 UBE2J2 TTLL10-AS1 CPSF3L LOC100288069 ACAP3 RNF223 LINC01128 CPTP ATAD3B ISG15 SDF4 PERM1 C1orf159 SAMD11 ATAD3A ATAD3C PUSL1 PLEKHN1 MIR429 FAM41C MIR6726 NOC2L
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC105378947 MTND2P28 MIB2 DVL1 SLC35E2 LOC105378589 VWA1 MMP23A LOC100132287 FNDC10 LOC105378592 HES4 FAM132A B3GALT6 LOC284600 TTLL10 NADK SKI AGRN CDK11A LOC107985728 LOC148413 MIR1302-2 GABRD TMEM88B LOC102725121 WASH7P TMEM240 TMEM52 MORN1 SSU72 AURKAIP1 UBE2J2 TTLL10-AS1 FAM138A ACAP3 LINC01128 ISG15 PERM1 SAMD11 MIR6859-2 PLEKHN1 FAM41C NOC2L MXRA8 KLHL17 DDX11L1 LOC100130417 LOC105378949 MIR6808 MIR6727 MIR200B LOC100506504 MRPL20 TAS1R3 CCNL2 OR4F29 LOC729737 LOC105378948 LOC107984841 LOC100287934 ANKRD65 LINC01342 OR4F16 SCNN1D LOC107985729 CDK11B FAM87B TNFRSF4 GNB1 LOC102724312 LINC00115 OR4F5 MIR200A MTND1P23 MMP23B LOC100288175 SLC35E2B TNFRSF18 LOC100129534 CPSF3L LOC101928626 LOC100288069 CALML6 LOC105378591 MIR6859-1 LOC100133331 RNF223 CPTP ATAD3B SDF4 CFAP74 C1orf159 ATAD3A MIR6723 ATAD3C PUSL1 MIR429 FAAP20 LOC100134822 MIR6726 PRKCZ
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion MXRA8 LOC107985729 CDK11B LOC148413 TNFRSF4 MIB2 LOC102724312 DVL1 MIR6808 MIR6727 MIR200B TMEM88B MIR200A TMEM240 MRPL20 MMP23B VWA1 TAS1R3 CCNL2 SSU72 TNFRSF18 AURKAIP1 UBE2J2 TTLL10-AS1 CPSF3L ACAP3 FNDC10 CPTP ATAD3B SDF4 FAM132A B3GALT6 ANKRD65 C1orf159 LINC01342 ATAD3A ATAD3C PUSL1 TTLL10 MIR429 SCNN1D MIR6726
nsv1011818 Chr.1:1394332 - 1575421 on Build GRCh38 Gain LOC107985729 LOC148413 LOC102724312 ATAD3B ANKRD65 ATAD3A TMEM88B ATAD3C TMEM240 MRPL20 VWA1 CCNL2 SSU72
esv2758913 Chr.1:1389149 - 2092899 on Build GRCh38 Gain+Loss LOC107985729 CDK11B LOC148413 GNB1 MIB2 LOC105378949 LOC102724312 SLC35E2 LOC105378589 GABRD TMEM88B TMEM240 MRPL20 MMP23B SLC35E2B VWA1 TMEM52 MMP23A CCNL2 SSU72 CALML6 LOC105378591 FNDC10 ATAD3B ANKRD65 CFAP74 ATAD3A ATAD3C NADK CDK11A PRKCZ

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

protein phosphatase

Gene Ontology Categories:

Function(s) Process(es)


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