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See other SSU72 CNV Assays ›
Gene Symbol
SSU72
Assay Reference Genome
Location

Chr.1:1556805 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03332263_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 29101

Gene Name:

 SSU72 homolog, RNA polymerase II CTD phosphatase

Gene Aliases:

 HSPC182, PNAS-120

Location:

 Chr.1:1541673-1574882 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SSU72 NM_014188.2 NP_054907.1
AF161530.1 AAF29145.1
AF277178.1 AAK07538.1
AJ276409.1 CAC81713.1
AK001809.1 BAA91921.1
AK297505.1
AK310067.1
BC008070.2 AAH08070.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv545000 Chr.1:1421170 - 1573654 on Build GRCh38 Loss ATAD3A ATAD3B TMEM88B LOC102724312 ANKRD65 VWA1 ATAD3C SSU72 LOC107985729 TMEM240
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss MMP23A MIR429 MIR6726 AURKAIP1 NADK ATAD3A CDK11B LINC00115 LOC107985728 CCNL2 LOC100288069 LINC01128 SDF4 AGRN TAS1R3 TTLL10-AS1 PERM1 SLC35E2 PUSL1 SCNN1D MIR200B SLC35E2B PLEKHN1 FAM132A LOC102724312 ANKRD65 NOC2L FAM87B TTLL10 CPSF3L MRPL20 ATAD3B RNF223 MIR200A TNFRSF4 LOC148413 SAMD11 LOC284600 ISG15 KLHL17 TMEM240 UBE2J2 TMEM88B DVL1 LOC100287934 HES4 MMP23B FAM41C SSU72 CPTP LOC107985729 MIR6727 MIR6808 LINC01342 CDK11A LOC100130417 FNDC10 LOC100288175 C1orf159 ACAP3 MXRA8 VWA1 MIB2 LOC105378948 ATAD3C B3GALT6 TNFRSF18
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss MMP23A MIR429 GABRD MIR6859-2 AURKAIP1 NADK ATAD3A CDK11B LOC107985728 LOC100288069 SDF4 LOC100132287 AGRN LOC100133331 TTLL10-AS1 LOC100134822 PERM1 GNB1 SKI PLEKHN1 LOC105378591 ANKRD65 NOC2L WASH7P LOC100129534 LOC102725121 CFAP74 FAM138A FAM87B TTLL10 FAAP20 CPSF3L MIR200A TNFRSF4 LOC148413 OR4F16 OR4F29 TMEM240 DDX11L1 DVL1 LOC729737 LOC105378589 MIR6808 LINC01342 FNDC10 MXRA8 MTND1P23 MIR6726 LINC00115 CCNL2 MIR1302-2 MTND2P28 LINC01128 LOC107984841 MORN1 TAS1R3 SLC35E2 PUSL1 SCNN1D LOC100506504 MIR200B SLC35E2B LOC105378592 CALML6 FAM132A LOC102724312 LOC105378947 LOC105378949 MRPL20 ATAD3B LOC101928626 RNF223 SAMD11 LOC284600 ISG15 KLHL17 UBE2J2 TMEM88B MIR6859-1 LOC100287934 HES4 PRKCZ MMP23B FAM41C MIR6723 SSU72 CPTP LOC107985729 MIR6727 OR4F5 CDK11A LOC100130417 TMEM52 LOC100288175 C1orf159 ACAP3 VWA1 MIB2 LOC105378948 ATAD3C B3GALT6 TNFRSF18
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion MRPL20 ATAD3B MIR200A MIR429 TNFRSF4 LOC148413 MIR6726 AURKAIP1 TMEM240 ATAD3A CDK11B UBE2J2 CCNL2 TMEM88B DVL1 MMP23B SSU72 CPTP SDF4 LOC107985729 TAS1R3 MIR6727 TTLL10-AS1 PUSL1 SCNN1D MIR6808 MIR200B LINC01342 FNDC10 C1orf159 FAM132A LOC102724312 ANKRD65 ACAP3 MXRA8 VWA1 MIB2 ATAD3C B3GALT6 TTLL10 TNFRSF18 CPSF3L
nsv1011818 Chr.1:1394332 - 1575421 on Build GRCh38 Gain MRPL20 ATAD3B LOC148413 TMEM240 ATAD3A CCNL2 TMEM88B LOC102724312 ANKRD65 VWA1 ATAD3C SSU72 LOC107985729
esv2758913 Chr.1:1389149 - 2092899 on Build GRCh38 Gain+Loss LOC105378949 MRPL20 ATAD3B MMP23A LOC148413 GABRD TMEM240 NADK ATAD3A CDK11B CCNL2 TMEM88B PRKCZ MMP23B SSU72 LOC107985729 LOC105378589 SLC35E2 GNB1 CDK11A SLC35E2B TMEM52 FNDC10 CALML6 LOC105378591 LOC102724312 ANKRD65 VWA1 MIB2 ATAD3C CFAP74

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

protein phosphatase

Gene Ontology Categories:

Function(s) Process(es)


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