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See other PLEKHN1 CNV Assays ›
Gene Symbol
PLEKHN1
Assay Reference Genome
Location

Chr.1:967240 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03333540_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 84069

Gene Name:

 pleckstrin homology domain containing N1

Gene Aliases:

 -

Location:

 Chr.1:965820-975108 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PLEKHN1 NM_001160184.1 NP_001153656.1
NM_032129.2 NP_115505.2
XM_006710944.3 XP_006711007.2
XM_011542248.2 XP_011540550.2
XM_017002474.1 XP_016857963.1
XM_017002475.1 XP_016857964.1
XM_017002476.1 XP_016857965.1
XM_017002477.1 XP_016857966.1
XM_017002478.1 XP_016857967.1
XM_017002479.1 XP_016857968.1
AL136730.1 CAB66664.1
BC101386.2 AAI01387.1
BC101387.2 AAI01388.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2762302 Chr.1:914637 - 1106320 on Build GRCh38 Gain RNF223 SAMD11 LOC100288175 PLEKHN1 KLHL17 AGRN HES4 PERM1 LOC100130417 LOC105378948 LOC107985728 ISG15 LOC284600 C1orf159 NOC2L
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss MTND2P28 LOC100130417 FAM41C GNB1 MIR200A MIR6808 LOC105378949 LOC107985728 CDK11B SLC35E2B RNF223 LOC100288175 B3GALT6 PLEKHN1 OR4F16 LINC01342 WASH7P SLC35E2 LOC729737 LOC148413 MIR1302-2 AGRN LOC105378591 MIR200B TTLL10 LINC00115 SAMD11 SDF4 ATAD3B SKI GABRD LOC107984841 CPTP HES4 TAS1R3 MIR6726 OR4F5 MIR6859-2 NADK LOC102725121 FAM132A LOC105378592 MIR6727 SCNN1D ACAP3 FAM138A ATAD3A MIB2 TMEM88B AURKAIP1 DDX11L1 ISG15 LOC284600 LOC100133331 TMEM240 CPSF3L LINC01128 LOC105378589 ATAD3C LOC100134822 LOC100288069 VWA1 FAM87B LOC102724312 PRKCZ MXRA8 TNFRSF18 MIR6859-1 TTLL10-AS1 CALML6 PUSL1 TMEM52 LOC105378947 C1orf159 CFAP74 TNFRSF4 LOC100132287 ANKRD65 CCNL2 MRPL20 KLHL17 FAAP20 DVL1 PERM1 LOC100287934 LOC100506504 NOC2L MIR429 MIR6723 LOC100129534 CDK11A MORN1 SSU72 OR4F29 MMP23A LOC107985729 LOC105378948 FNDC10 LOC101928626 UBE2J2 MTND1P23 MMP23B
nsv950451 Chr.1:899421 - 1094520 on Build GRCh38 Deletion RNF223 SAMD11 LOC100288175 PLEKHN1 KLHL17 AGRN HES4 PERM1 LOC100130417 LOC105378948 LOC107985728 ISG15 LOC284600 C1orf159 NOC2L
nsv509035 Chr.1:891406 - 985724 on Build GRCh38 Insertion SAMD11 LOC100130417 PLEKHN1 KLHL17 LOC107985728 PERM1 LOC284600 NOC2L
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain SAMD11 SDF4 KLHL17 HES4 PERM1 LOC100130417 FAM41C MIR200A LOC107985728 NOC2L RNF223 MIR429 TNFRSF18 LOC100288175 PLEKHN1 LINC01342 AGRN TTLL10-AS1 MIR200B TTLL10 LOC105378948 ISG15 LOC284600 C1orf159 TNFRSF4
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss TMEM240 CPSF3L LINC01128 LOC100130417 FAM41C ATAD3C MIR200A MIR6808 LOC100288069 VWA1 FAM87B LOC107985728 LOC102724312 CDK11B SLC35E2B RNF223 MXRA8 TNFRSF18 LOC100288175 B3GALT6 PLEKHN1 LINC01342 SLC35E2 LOC148413 AGRN TTLL10-AS1 MIR200B TTLL10 PUSL1 C1orf159 LINC00115 TNFRSF4 SAMD11 SDF4 ANKRD65 ATAD3B CCNL2 CPTP MRPL20 KLHL17 HES4 DVL1 PERM1 TAS1R3 MIR6726 NADK LOC100287934 NOC2L MIR429 CDK11A FAM132A MIR6727 SCNN1D SSU72 ACAP3 ATAD3A MIB2 TMEM88B AURKAIP1 MMP23A LOC107985729 LOC105378948 FNDC10 UBE2J2 ISG15 LOC284600 MMP23B
dgv5n100 Chr.1:585989 - 1114424 on Build GRCh38 Gain LOC100133331 SAMD11 MTND2P28 LOC107984841 LINC01128 KLHL17 HES4 PERM1 LOC100130417 FAM41C LOC100287934 LOC100288069 FAM87B LOC107985728 NOC2L RNF223 MIR6723 LOC100288175 PLEKHN1 OR4F16 AGRN LOC105378948 LOC101928626 LOC105378947 ISG15 MTND1P23 LOC284600 C1orf159 LINC00115
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss SAMD11 SDF4 LINC01128 KLHL17 HES4 PERM1 LOC100130417 FAM41C MIR200A FAM87B LOC107985728 NOC2L RNF223 MIR429 TNFRSF18 LOC100288175 B3GALT6 PLEKHN1 LINC01342 FAM132A AGRN TTLL10-AS1 MIR200B TTLL10 LOC105378948 UBE2J2 ISG15 LOC284600 C1orf159 LINC00115 TNFRSF4
nsv1013524 Chr.1:939510 - 1161955 on Build GRCh38 Gain RNF223 SAMD11 LOC100288175 PLEKHN1 LINC01342 KLHL17 AGRN HES4 PERM1 LOC105378948 ISG15 C1orf159 NOC2L
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion RNF223 SAMD11 MIR429 SDF4 TNFRSF18 LOC100288175 PLEKHN1 LINC01342 KLHL17 AGRN HES4 TTLL10-AS1 PERM1 MIR200B TTLL10 MIR200A LOC105378948 ISG15 C1orf159 NOC2L TNFRSF4
nsv544895 Chr.1:917392 - 1054900 on Build GRCh38 Loss SAMD11 LOC100130417 PLEKHN1 KLHL17 AGRN HES4 LOC107985728 ISG15 PERM1 LOC284600 NOC2L
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain SAMD11 SDF4 ANKRD65 CPSF3L CCNL2 CPTP MRPL20 KLHL17 HES4 DVL1 PERM1 TAS1R3 MIR6726 LOC100130417 MIR200A MIR6808 LOC107985728 NOC2L RNF223 MXRA8 MIR429 TNFRSF18 LOC100288175 B3GALT6 PLEKHN1 LINC01342 LOC148413 FAM132A AGRN TTLL10-AS1 MIR6727 SCNN1D MIR200B TTLL10 ACAP3 PUSL1 TMEM88B AURKAIP1 LOC105378948 UBE2J2 ISG15 LOC284600 C1orf159 TNFRSF4
nsv832980 Chr.1:848279 - 1007037 on Build GRCh38 Gain SAMD11 LOC100130417 FAM41C PLEKHN1 LINC01128 KLHL17 HES4 LOC107985728 PERM1 LOC284600 NOC2L

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Process(es)


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