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See other SSU72 CNV Assays ›
Gene Symbol
SSU72
Assay Reference Genome
Location

Chr.1:1547965 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03334527_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 29101

Gene Name:

 SSU72 homolog, RNA polymerase II CTD phosphatase

Gene Aliases:

 HSPC182, PNAS-120

Location:

 Chr.1:1541673-1574882 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SSU72 NM_014188.2 NP_054907.1
AF161530.1 AAF29145.1
AF277178.1 AAK07538.1
AJ276409.1 CAC81713.1
AK001809.1 BAA91921.1
AK297505.1
AK310067.1
BC008070.2 AAH08070.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv545000 Chr.1:1421170 - 1573654 on Build GRCh38 Loss LOC102724312 TMEM240 LOC107985729 SSU72 ATAD3B TMEM88B ATAD3C ATAD3A ANKRD65 VWA1
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss AURKAIP1 MXRA8 PLEKHN1 LOC107985729 TNFRSF18 TNFRSF4 LOC100288069 TMEM88B ACAP3 MIR429 CPTP LOC102724312 FAM132A TMEM240 LINC01128 PUSL1 ATAD3C VWA1 LINC00115 NADK MIR200A SLC35E2B UBE2J2 LOC100288175 LOC148413 MIB2 SLC35E2 LOC100287934 MMP23B NOC2L CDK11B CDK11A TTLL10-AS1 RNF223 SSU72 MIR6726 ATAD3B DVL1 LOC105378948 B3GALT6 FNDC10 FAM87B CPSF3L SAMD11 PERM1 ATAD3A SCNN1D ANKRD65 C1orf159 KLHL17 SDF4 MRPL20 FAM41C MIR200B TAS1R3 HES4 AGRN LOC284600 LOC107985728 MIR6727 ISG15 MMP23A TTLL10 LOC100130417 CCNL2 MIR6808 LINC01342
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC105378592 AURKAIP1 LOC107985729 TNFRSF18 TNFRSF4 LOC100288069 MIR6859-1 MIR429 CPTP MIR6723 MTND2P28 LINC01128 ATAD3C LINC00115 TMEM52 NADK GNB1 SLC35E2B LOC101928626 CFAP74 LOC100288175 MTND1P23 SKI OR4F16 LOC100506504 SLC35E2 WASH7P CDK11A SSU72 MIR6726 B3GALT6 SAMD11 MIR6859-2 PERM1 ATAD3A ANKRD65 C1orf159 KLHL17 SDF4 FAM41C MORN1 AGRN LOC100133331 LOC107985728 MIR6727 ISG15 CCNL2 MIR6808 FAM138A CALML6 DDX11L1 LINC01342 LOC107984841 MXRA8 PLEKHN1 FAAP20 LOC105378591 LOC100132287 TMEM88B ACAP3 LOC105378589 LOC102724312 FAM132A TMEM240 PUSL1 LOC100129534 LOC102725121 VWA1 MIR200A UBE2J2 LOC729737 LOC148413 MIB2 LOC100287934 MMP23B NOC2L CDK11B MIR1302-2 TTLL10-AS1 LOC105378949 RNF223 ATAD3B DVL1 LOC100134822 LOC105378948 FNDC10 FAM87B CPSF3L SCNN1D OR4F5 GABRD MRPL20 PRKCZ LOC105378947 MIR200B TAS1R3 HES4 LOC284600 MMP23A TTLL10 LOC100130417 OR4F29
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion TTLL10-AS1 AURKAIP1 MXRA8 LOC107985729 SSU72 TNFRSF18 TNFRSF4 MIR6726 ATAD3B TMEM88B DVL1 ACAP3 MIR429 CPTP LOC102724312 B3GALT6 FAM132A FNDC10 TMEM240 CPSF3L PUSL1 ATAD3C ATAD3A SCNN1D ANKRD65 VWA1 C1orf159 MIR200A SDF4 MRPL20 UBE2J2 MIR200B TAS1R3 MIR6727 TTLL10 LOC148413 CCNL2 MIR6808 MIB2 MMP23B LINC01342 CDK11B
nsv1011818 Chr.1:1394332 - 1575421 on Build GRCh38 Gain MRPL20 LOC107985729 SSU72 ATAD3B TMEM88B LOC102724312 TMEM240 LOC148413 CCNL2 ATAD3C ATAD3A ANKRD65 VWA1
esv2758913 Chr.1:1389149 - 2092899 on Build GRCh38 Gain+Loss CDK11A LOC105378949 LOC107985729 SSU72 LOC105378591 ATAD3B TMEM88B LOC105378589 LOC102724312 FNDC10 TMEM240 ATAD3C ATAD3A ANKRD65 VWA1 TMEM52 NADK GNB1 GABRD SLC35E2B MRPL20 PRKCZ CFAP74 MMP23A LOC148413 CCNL2 MIB2 SLC35E2 CALML6 MMP23B CDK11B

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

protein phosphatase

Gene Ontology Categories:

Function(s) Process(es)


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