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See other SSU72 CNV Assays ›
Gene Symbol
SSU72
Assay Reference Genome
Location

Chr.1:1548838 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03335258_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 29101

Gene Name:

 SSU72 homolog, RNA polymerase II CTD phosphatase

Gene Aliases:

 HSPC182, PNAS-120

Location:

 Chr.1:1541673-1574882 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SSU72 NM_014188.2 NP_054907.1
AF161530.1 AAF29145.1
AF277178.1 AAK07538.1
AJ276409.1 CAC81713.1
AK001809.1 BAA91921.1
AK297505.1
AK310067.1
BC008070.2 AAH08070.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv545000 Chr.1:1421170 - 1573654 on Build GRCh38 Loss ANKRD65 VWA1 SSU72 ATAD3B TMEM88B TMEM240 LOC107985729 LOC102724312 ATAD3C ATAD3A
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss KLHL17 LOC100287934 LOC107985728 TMEM88B B3GALT6 SLC35E2 CDK11B ANKRD65 NOC2L TMEM240 FAM87B LOC100288175 ACAP3 RNF223 CCNL2 HES4 ATAD3A LOC100288069 ATAD3B LINC01128 C1orf159 MMP23B MIR6726 FNDC10 TNFRSF4 MIR200A SLC35E2B CPTP MIB2 ATAD3C MIR6727 CDK11A VWA1 DVL1 FAM41C MIR6808 LINC00115 PLEKHN1 MIR429 FAM132A TTLL10 LOC284600 TNFRSF18 LOC107985729 LOC100130417 SAMD11 NADK LOC105378948 PERM1 SCNN1D SSU72 MRPL20 MMP23A MIR200B ISG15 MXRA8 UBE2J2 CPSF3L TAS1R3 SDF4 LOC148413 PUSL1 AGRN TTLL10-AS1 AURKAIP1 LOC102724312 LINC01342
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss KLHL17 LOC107985728 LOC100129534 CDK11B ANKRD65 TMEM240 FAM87B LOC100288175 RNF223 HES4 LINC01128 MIR6726 FNDC10 CPTP OR4F5 FAM138A LOC107984841 ATAD3C MIR6727 VWA1 DVL1 LINC00115 LOC105378947 PLEKHN1 WASH7P MIR429 FAM132A TTLL10 LOC284600 PRKCZ LOC105378948 LOC100133331 PERM1 SSU72 LOC729737 MRPL20 MIR6859-1 LOC105378592 MIR200B MXRA8 CPSF3L TAS1R3 SDF4 LOC148413 AGRN TTLL10-AS1 AURKAIP1 LOC105378591 MIR6723 LOC101928626 LOC100287934 TMEM88B SKI LOC100132287 B3GALT6 SLC35E2 NOC2L LOC102725121 ACAP3 CCNL2 ATAD3A LOC100288069 ATAD3B MIR6859-2 MTND2P28 C1orf159 MTND1P23 FAAP20 CFAP74 MMP23B TNFRSF4 MIR200A SLC35E2B TMEM52 MIB2 CALML6 OR4F16 CDK11A FAM41C MIR6808 MIR1302-2 LOC100506504 TNFRSF18 LOC107985729 LOC100130417 DDX11L1 SAMD11 NADK MORN1 LOC105378949 SCNN1D OR4F29 GABRD MMP23A ISG15 UBE2J2 LOC105378589 PUSL1 LOC102724312 LOC100134822 GNB1 LINC01342
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion VWA1 DVL1 TMEM88B MIR6808 B3GALT6 CDK11B ANKRD65 MIR429 FAM132A TTLL10 TMEM240 TNFRSF18 LOC107985729 ACAP3 CCNL2 ATAD3A SCNN1D SSU72 ATAD3B MRPL20 C1orf159 MIR200B MXRA8 UBE2J2 MMP23B MIR6726 FNDC10 CPSF3L TNFRSF4 TAS1R3 SDF4 MIR200A LOC148413 PUSL1 CPTP TTLL10-AS1 AURKAIP1 MIB2 LOC102724312 ATAD3C MIR6727 LINC01342
nsv1011818 Chr.1:1394332 - 1575421 on Build GRCh38 Gain VWA1 SSU72 ATAD3B TMEM88B MRPL20 LOC148413 ANKRD65 TMEM240 LOC107985729 LOC102724312 ATAD3C CCNL2 ATAD3A
esv2758913 Chr.1:1389149 - 2092899 on Build GRCh38 Gain+Loss CDK11A VWA1 TMEM88B SLC35E2 CDK11B ANKRD65 TMEM240 LOC107985729 PRKCZ NADK CCNL2 ATAD3A LOC105378949 SSU72 ATAD3B GABRD MRPL20 MMP23A CFAP74 MMP23B FNDC10 LOC105378589 LOC148413 SLC35E2B TMEM52 MIB2 LOC105378591 LOC102724312 ATAD3C GNB1 CALML6

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

protein phosphatase

Gene Ontology Categories:

Function(s) Process(es)


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