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See other SSU72 CNV Assays ›
Gene Symbol
SSU72
Assay Reference Genome
Location

Chr.1:1553103 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03335563_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 29101

Gene Name:

 SSU72 homolog, RNA polymerase II CTD phosphatase

Gene Aliases:

 HSPC182, PNAS-120

Location:

 Chr.1:1541673-1574882 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SSU72 NM_014188.2 NP_054907.1
AF161530.1 AAF29145.1
AF277178.1 AAK07538.1
AJ276409.1 CAC81713.1
AK001809.1 BAA91921.1
AK297505.1
AK310067.1
BC008070.2 AAH08070.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv545000 Chr.1:1421170 - 1573654 on Build GRCh38 Loss ATAD3B ANKRD65 LOC102724312 ATAD3A TMEM88B SSU72 ATAD3C LOC107985729 VWA1 TMEM240
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss LOC100288069 ATAD3B MIR200A TNFRSF18 SCNN1D SLC35E2B CPSF3L MRPL20 FAM132A LINC00115 TNFRSF4 MIR6726 PUSL1 PLEKHN1 TMEM240 LOC107985728 LINC01342 C1orf159 ATAD3A SSU72 NADK CDK11B LINC01128 MMP23B MIB2 ATAD3C LOC100287934 MXRA8 FAM87B PERM1 CCNL2 MIR429 LOC100288175 SAMD11 LOC102724312 TMEM88B LOC284600 MIR6727 NOC2L TTLL10 AURKAIP1 CDK11A CPTP RNF223 B3GALT6 MIR6808 LOC105378948 FAM41C SDF4 LOC148413 HES4 LOC100130417 TAS1R3 SLC35E2 ACAP3 TTLL10-AS1 ANKRD65 DVL1 MMP23A ISG15 MIR200B UBE2J2 KLHL17 AGRN LOC107985729 VWA1 FNDC10
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss SCNN1D SLC35E2B CPSF3L TNFRSF4 LOC107984841 TMEM240 LOC107985728 LOC105378949 LOC100133331 LOC105378589 MORN1 CDK11B LOC729737 CFAP74 MIB2 FAM138A ATAD3C LOC105378947 FAM87B CCNL2 LOC100132287 SAMD11 LOC101928626 LOC102724312 TMEM88B LOC284600 MIR6727 GNB1 MIR6723 AURKAIP1 PRKCZ WASH7P RNF223 MIR6808 FAM41C LOC100506504 GABRD HES4 LOC100130417 SLC35E2 ACAP3 MIR200B FAAP20 KLHL17 LOC100129534 FNDC10 LOC100288069 ATAD3B MTND1P23 MIR200A TNFRSF18 OR4F29 MRPL20 FAM132A LOC105378591 LINC00115 MIR6726 PUSL1 PLEKHN1 LINC01342 C1orf159 ATAD3A SSU72 NADK MIR6859-2 LOC100134822 CALML6 LINC01128 MMP23B LOC102725121 LOC100287934 LOC105378592 MXRA8 PERM1 OR4F5 MIR1302-2 MIR429 LOC100288175 NOC2L TTLL10 DDX11L1 TMEM52 CDK11A MTND2P28 CPTP B3GALT6 LOC105378948 SDF4 LOC148413 TAS1R3 MIR6859-1 TTLL10-AS1 ANKRD65 DVL1 OR4F16 MMP23A ISG15 UBE2J2 AGRN SKI LOC107985729 VWA1
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion CCNL2 ATAD3B MIR429 LOC102724312 TMEM88B MIR6727 TTLL10 MIR200A TNFRSF18 SCNN1D AURKAIP1 CPSF3L MRPL20 FAM132A TNFRSF4 MIR6726 PUSL1 CPTP TMEM240 B3GALT6 LINC01342 MIR6808 C1orf159 ATAD3A SSU72 CDK11B SDF4 LOC148413 TAS1R3 ACAP3 TTLL10-AS1 ANKRD65 DVL1 MMP23B MIB2 MIR200B UBE2J2 ATAD3C MXRA8 LOC107985729 VWA1 FNDC10
nsv1011818 Chr.1:1394332 - 1575421 on Build GRCh38 Gain CCNL2 ATAD3B LOC102724312 ATAD3A TMEM88B SSU72 LOC148413 MRPL20 ANKRD65 ATAD3C LOC107985729 VWA1 TMEM240
esv2758913 Chr.1:1389149 - 2092899 on Build GRCh38 Gain+Loss CCNL2 ATAD3B LOC102724312 TMEM88B GNB1 SLC35E2B MRPL20 PRKCZ TMEM52 LOC105378591 CDK11A TMEM240 LOC105378949 LOC105378589 ATAD3A SSU72 NADK CDK11B GABRD LOC148413 CFAP74 SLC35E2 CALML6 ANKRD65 MMP23B MIB2 MMP23A ATAD3C LOC107985729 VWA1 FNDC10

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

protein phosphatase

Gene Ontology Categories:

Function(s) Process(es)


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