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See other SSU72 CNV Assays ›
Gene Symbol
SSU72
Assay Reference Genome
Location

Chr.1:1553103 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03335563_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 29101

Gene Name:

 SSU72 homolog, RNA polymerase II CTD phosphatase

Gene Aliases:

 HSPC182, PNAS-120

Location:

 Chr.1:1541673-1574882 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SSU72 NM_014188.2 NP_054907.1
AF161530.1 AAF29145.1
AF277178.1 AAK07538.1
AJ276409.1 CAC81713.1
AK001809.1 BAA91921.1
AK297505.1
AK310067.1
BC008070.2 AAH08070.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv545000 Chr.1:1421170 - 1573654 on Build GRCh38 Loss LOC107985729 ATAD3A ANKRD65 LOC102724312 TMEM240 TMEM88B ATAD3B ATAD3C SSU72 VWA1
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss LOC105378948 FNDC10 ANKRD65 LOC107985728 ISG15 LOC284600 MMP23B CPTP TNFRSF4 FAM132A LOC102724312 TMEM240 FAM41C ATAD3B AURKAIP1 CDK11A LINC00115 MMP23A SDF4 CPSF3L RNF223 FAM87B LOC100288175 SLC35E2 MXRA8 NADK MIR6726 SAMD11 PUSL1 VWA1 ATAD3A MIR6808 TTLL10-AS1 NOC2L PERM1 LINC01128 MIR200A LOC107985729 SCNN1D SLC35E2B PLEKHN1 DVL1 B3GALT6 LOC100288069 MIR429 MIR6727 TAS1R3 LOC100130417 KLHL17 TNFRSF18 CCNL2 LOC148413 ATAD3C AGRN C1orf159 LOC100287934 LINC01342 HES4 CDK11B MIR200B TTLL10 UBE2J2 MIB2 MRPL20 ACAP3 TMEM88B SSU72
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC100129534 LOC105378948 FNDC10 ANKRD65 GABRD ISG15 LOC284600 DDX11L1 FAM41C WASH7P CDK11A OR4F5 RNF223 MIR6859-2 MXRA8 MIR6726 SAMD11 PUSL1 LOC729737 VWA1 ATAD3A MIR6808 LOC105378592 MIR6859-1 LOC102725121 NOC2L MIR200A GNB1 SCNN1D SLC35E2B LOC105378589 PLEKHN1 DVL1 LOC100288069 MIR429 MIR6727 MIR1302-2 LOC101928626 PRKCZ TNFRSF18 CCNL2 LOC148413 AGRN MTND2P28 MTND1P23 FAAP20 LINC01342 CFAP74 LOC100134822 MIR6723 TTLL10 MRPL20 TMEM52 LOC107985728 MMP23B LOC100506504 CPTP OR4F29 TNFRSF4 FAM132A LOC102724312 TMEM240 ATAD3B AURKAIP1 FAM138A LINC00115 MMP23A SDF4 CPSF3L FAM87B LOC100288175 SLC35E2 LOC105378949 NADK CALML6 LOC100132287 TTLL10-AS1 PERM1 LINC01128 LOC107985729 B3GALT6 TAS1R3 LOC100130417 OR4F16 KLHL17 LOC105378591 ATAD3C LOC105378947 MORN1 C1orf159 LOC100287934 HES4 LOC100133331 CDK11B MIR200B SKI LOC107984841 UBE2J2 MIB2 ACAP3 TMEM88B SSU72
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion LOC107985729 SCNN1D DVL1 FNDC10 B3GALT6 ANKRD65 MMP23B MIR429 MIR6727 CPTP TAS1R3 TNFRSF4 FAM132A LOC102724312 TMEM240 TNFRSF18 CCNL2 ATAD3B AURKAIP1 LOC148413 ATAD3C C1orf159 SDF4 CPSF3L LINC01342 MXRA8 MIR6726 PUSL1 VWA1 ATAD3A CDK11B MIR6808 MIR200B TTLL10 UBE2J2 MIB2 MRPL20 TTLL10-AS1 ACAP3 TMEM88B MIR200A SSU72
nsv1011818 Chr.1:1394332 - 1575421 on Build GRCh38 Gain LOC107985729 ANKRD65 VWA1 ATAD3A LOC102724312 TMEM240 CCNL2 MRPL20 TMEM88B ATAD3B LOC148413 ATAD3C SSU72
esv2758913 Chr.1:1389149 - 2092899 on Build GRCh38 Gain+Loss LOC107985729 SLC35E2B LOC105378589 TMEM52 FNDC10 ANKRD65 GABRD MMP23B LOC102724312 PRKCZ TMEM240 CCNL2 LOC105378591 ATAD3B LOC148413 ATAD3C CDK11A MMP23A SLC35E2 LOC105378949 NADK VWA1 CALML6 CFAP74 ATAD3A CDK11B MIB2 MRPL20 TMEM88B SSU72 GNB1

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

protein phosphatase

Gene Ontology Categories:

Function(s) Process(es)


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