Hs03335645_cn

• Gene Symbol: CHD1L
• Assay Reference Genome Location: Chr.1:147211499 on build GRCh38
• Cytoband: 1q21.1

Target Gene Details

• Entrez Gene ID: 9557
• Gene Name: chromodomain helicase DNA binding protein 1 like
• Gene Aliases: ALC1, CHDL
• Location: Chr.1:147172804-147295766 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CHD1L	XM_017002858.1			XP_016858347.1

Target Gene Details

• Entrez Gene ID: 2330
• Gene Name: flavin containing monooxygenase 5
• Gene Aliases: -
• Location: Chr.1:147183963-147225798 on Build GRCh38
• Assay Gene Location: Within Intron 5

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FMO5	NM_001144829.2			NP_001138301.1
	NM_001144830.2			NP_001138302.1
	NM_001461.3			NP_001452.2
	XM_005272946.4			XP_005273003.1
	XM_005272947.4			XP_005273004.1
	XM_005272948.4			XP_005273005.1
	XM_006711244.3			XP_006711307.1
	XM_006711245.3			XP_006711308.1
	XM_011509350.2			XP_011507652.1
	XM_011509351.2			XP_011507653.1
	XM_017000801.1			XP_016856290.1
	XM_017000802.1			XP_016856291.1
	AK022172.1			BAB13975.1
	AK222728.1			BAD96448.1
	AK225739.1
	AK314647.1
	BC035687.1			AAH35687.1
	L37080.1			AAA67849.1
	Z47553.1			CAA87633.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1005055	Chr.1:145642988 - 148991068 on Build GRCh38	Loss	LINC01138 RNVU1-1 ANKRD35 RNVU1-8 LOC100996517 LIX1L MIR6736 PDZK1P1 MIR5087 GPR89B HYDIN2 LINC00624 CH17-408M7.1 RNVU1-3 CHD1L RNVU1-7 TXNIP NBPF11 LOC101928979 LOC101927468 POLR3C GJA8 LOC284561 FMO5 LOC100132057 MIR6077 PEX11B NBPF13P CD160 PRKAB2 PIAS3 PPIAL4G LOC100505824 RNF115 RBM8A GJA5 NUDT4P1 PDIA3P1 NBPF10 POLR3GL NUDT4P2 NBPF12 ANKRD34A HFE2 ITGA10 NUDT17 RNVU1-6 ACP6 LOC728989 LOC105371242 NOTCH2NL BCL9 PDE4DIP GNRHR2 RNU1-13P LOC100996763 LOC105371226 PDZK1 NBPF14 GPR89A
dgv327n100	Chr.1:146028214 - 148860637 on Build GRCh38	Gain	LINC01138 RNVU1-1 RNVU1-8 PRKAB2 PPIAL4G LOC100505824 LOC100996517 GJA5 NUDT4P1 PDIA3P1 NBPF10 PDZK1P1 MIR5087 GPR89B NUDT4P2 HYDIN2 LINC00624 NBPF12 CH17-408M7.1 RNVU1-3 RNVU1-6 CHD1L RNVU1-7 NBPF11 ACP6 LOC101928979 LOC728989 LOC105371242 NOTCH2NL LOC101927468 BCL9 PDE4DIP RNU1-13P LOC100996763 LOC105371226 NBPF14 GJA8 LOC284561 FMO5 LOC100132057 MIR6077 NBPF13P
esv2761299	Chr.1:146068341 - 148926801 on Build GRCh38	Gain+Loss	LINC01138 RNVU1-1 RNVU1-8 PRKAB2 PPIAL4G LOC100505824 LOC100996517 GJA5 NUDT4P1 PDIA3P1 NBPF10 PDZK1P1 MIR5087 GPR89B NUDT4P2 HYDIN2 LINC00624 NBPF12 CH17-408M7.1 RNVU1-3 CHD1L RNVU1-7 NBPF11 ACP6 LOC728989 LOC105371242 NOTCH2NL LOC101927468 BCL9 PDE4DIP RNU1-13P LOC100996763 LOC105371226 NBPF14 GJA8 LOC284561 FMO5 LOC100132057 MIR6077 NBPF13P
nsv509457	Chr.1:145948024 - 149021821 on Build GRCh38	Insertion	LINC01138 RNVU1-1 RNVU1-8 PRKAB2 PPIAL4G LOC100505824 LOC100996517 GJA5 NUDT4P1 LIX1L PDIA3P1 NBPF10 POLR3GL PDZK1P1 MIR5087 GPR89B NUDT4P2 HYDIN2 LINC00624 NBPF12 CH17-408M7.1 ANKRD34A HFE2 RNVU1-3 RNVU1-6 CHD1L RNVU1-7 TXNIP NBPF11 ACP6 LOC101928979 LOC728989 LOC105371242 NOTCH2NL LOC101927468 BCL9 PDE4DIP RNU1-13P LOC100996763 LOC105371226 NBPF14 GJA8 LOC284561 FMO5 LOC100132057 MIR6077 NBPF13P
nsv1132304	Chr.1:146186094 - 148977674 on Build GRCh38	Duplication	LINC01138 RNVU1-1 RNVU1-8 PRKAB2 PPIAL4G LOC100505824 LOC100996517 GJA5 NUDT4P1 PDIA3P1 PDZK1P1 MIR5087 GPR89B NUDT4P2 HYDIN2 LINC00624 NBPF12 CH17-408M7.1 RNVU1-3 CHD1L RNVU1-7 NBPF11 ACP6 LOC728989 LOC105371242 NOTCH2NL LOC101927468 BCL9 PDE4DIP RNU1-13P LOC100996763 LOC105371226 NBPF14 GJA8 LOC284561 FMO5 LOC100132057 MIR6077 NBPF13P
nsv1003688	Chr.1:146036817 - 148934526 on Build GRCh38	Gain	LINC01138 RNVU1-1 RNVU1-8 PRKAB2 PPIAL4G LOC100505824 LOC100996517 GJA5 NUDT4P1 PDIA3P1 NBPF10 PDZK1P1 MIR5087 GPR89B NUDT4P2 HYDIN2 LINC00624 NBPF12 CH17-408M7.1 RNVU1-3 RNVU1-6 CHD1L RNVU1-7 NBPF11 ACP6 LOC101928979 LOC728989 LOC105371242 NOTCH2NL LOC101927468 BCL9 PDE4DIP RNU1-13P LOC100996763 LOC105371226 NBPF14 GJA8 LOC284561 FMO5 LOC100132057 MIR6077 NBPF13P
dgv66e199	Chr.1:146055970 - 149056514 on Build GRCh38	Deletion	LINC01138 RNVU1-1 RNVU1-8 PRKAB2 PPIAL4G LOC100505824 LOC100996517 GJA5 NUDT4P1 PDIA3P1 NBPF10 PDZK1P1 MIR5087 GPR89B NUDT4P2 HYDIN2 LINC00624 NBPF12 CH17-408M7.1 RNVU1-3 CHD1L RNVU1-7 NBPF11 ACP6 LOC101928979 LOC728989 LOC105371242 NOTCH2NL LOC101927468 BCL9 PDE4DIP RNU1-13P LOC100996763 LOC105371226 NBPF14 GJA8 LOC284561 FMO5 LOC100132057 NBPF9 MIR6077 NBPF13P
nsv437047	Chr.1:147171976 - 147369886 on Build GRCh38	Loss	PRKAB2 FMO5 PDIA3P1 CHD1L

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

oxidoreductase, oxygenase, metabolite interconversion enzyme

Gene Ontology Categories:

Process(es)

nucleotide-excision repair, DNA duplex unwinding
DNA repair
nucleotide-excision repair, preincision complex stabilization
nucleotide-excision repair, preincision complex assembly
nucleotide-excision repair, DNA incision, 3'-to lesion
nucleotide-excision repair, DNA incision, 5'-to lesion
chromatin remodeling
cellular response to DNA damage stimulus
nucleotide-excision repair, DNA incision
global genome nucleotide-excision repair
biological_process
drug metabolic process
oxidation-reduction process

Function(s)

nucleotide binding
nucleic acid binding
ATP-dependent DNA helicase activity
protein binding
ATP binding
ATPase activity
N,N-dimethylaniline monooxygenase activity
flavin adenine dinucleotide binding
NADP binding