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See other PLEKHN1 CNV Assays ›
Gene Symbol
PLEKHN1
Assay Reference Genome
Location

Chr.1:968222 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03337860_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 84069

Gene Name:

 pleckstrin homology domain containing N1

Gene Aliases:

 -

Location:

 Chr.1:965820-975108 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PLEKHN1 NM_001160184.1 NP_001153656.1
NM_032129.2 NP_115505.2
XM_006710944.3 XP_006711007.2
XM_011542248.2 XP_011540550.2
XM_017002474.1 XP_016857963.1
XM_017002475.1 XP_016857964.1
XM_017002476.1 XP_016857965.1
XM_017002477.1 XP_016857966.1
XM_017002478.1 XP_016857967.1
XM_017002479.1 XP_016857968.1
AL136730.1 CAB66664.1
BC101386.2 AAI01387.1
BC101387.2 AAI01388.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2762302 Chr.1:914637 - 1106320 on Build GRCh38 Gain AGRN KLHL17 LOC100288175 LOC100130417 LOC107985728 LOC284600 C1orf159 PERM1 RNF223 HES4 PLEKHN1 NOC2L SAMD11 ISG15 LOC105378948
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss FAM41C DVL1 LINC00115 LINC01128 AURKAIP1 ISG15 LOC100129534 FAM87B SCNN1D PERM1 CPTP GNB1 LOC100506504 GABRD MIR6727 LOC102724312 CDK11B MTND2P28 LOC102725121 SLC35E2B CPSF3L PUSL1 LOC100287934 LOC100288175 LOC107985729 TNFRSF18 SDF4 LOC105378592 SLC35E2 MIR200A ANKRD65 CFAP74 LOC105378947 LOC148413 DDX11L1 LOC100132287 SKI UBE2J2 OR4F5 LOC105378948 LOC100133331 MIB2 LOC284600 OR4F29 PRKCZ MIR6859-2 MTND1P23 TTLL10-AS1 CDK11A CCNL2 FNDC10 LOC105378949 AGRN KLHL17 TMEM240 LOC100130417 LOC107985728 C1orf159 MMP23B MIR6859-1 SAMD11 LOC107984841 OR4F16 ATAD3C MIR429 LINC01342 TAS1R3 TNFRSF4 MORN1 FAM138A LOC101928626 ATAD3A FAM132A FAAP20 VWA1 LOC105378591 TMEM52 MIR6723 WASH7P PLEKHN1 LOC729737 MIR1302-2 MIR200B SSU72 MMP23A LOC100288069 RNF223 HES4 LOC100134822 LOC105378589 MIR6726 ATAD3B TMEM88B MIR6808 B3GALT6 NOC2L CALML6 TTLL10 ACAP3 MXRA8 MRPL20 NADK
nsv950451 Chr.1:899421 - 1094520 on Build GRCh38 Deletion AGRN KLHL17 LOC100288175 LOC100130417 LOC107985728 LOC284600 C1orf159 PERM1 RNF223 HES4 PLEKHN1 NOC2L SAMD11 ISG15 LOC105378948
nsv509035 Chr.1:891406 - 985724 on Build GRCh38 Insertion KLHL17 LOC100130417 LOC107985728 LOC284600 PLEKHN1 NOC2L SAMD11 PERM1
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain AGRN KLHL17 LOC100288175 LOC100130417 LOC107985728 TNFRSF18 FAM41C C1orf159 SDF4 MIR200A PLEKHN1 SAMD11 ISG15 MIR200B LOC105378948 LOC284600 MIR429 LINC01342 PERM1 RNF223 HES4 TNFRSF4 TTLL10-AS1 NOC2L TTLL10
dgv5n100 Chr.1:585989 - 1114424 on Build GRCh38 Gain AGRN KLHL17 LOC100288175 LOC100130417 LOC107985728 FAM41C C1orf159 MIR6723 LINC00115 LINC01128 LOC105378947 PLEKHN1 SAMD11 LOC107984841 ISG15 OR4F16 LOC105378948 FAM87B LOC100133331 LOC284600 LOC100288069 PERM1 RNF223 HES4 MTND1P23 MTND2P28 LOC101928626 NOC2L LOC100287934
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss AGRN KLHL17 TMEM240 LOC100130417 LOC107985728 FAM41C C1orf159 MMP23B DVL1 LINC00115 LINC01128 AURKAIP1 SAMD11 ISG15 FAM87B ATAD3C MIR429 SCNN1D LINC01342 PERM1 CPTP TAS1R3 TNFRSF4 MIR6727 LOC102724312 CDK11B ATAD3A SLC35E2B CPSF3L PUSL1 LOC100287934 FAM132A LOC100288175 VWA1 LOC107985729 TNFRSF18 SDF4 SLC35E2 MIR200A ANKRD65 LOC148413 UBE2J2 PLEKHN1 MIR200B LOC105378948 SSU72 MIB2 MMP23A LOC284600 LOC100288069 RNF223 HES4 MIR6726 ATAD3B TMEM88B TTLL10-AS1 CDK11A MIR6808 CCNL2 B3GALT6 NOC2L FNDC10 TTLL10 ACAP3 MXRA8 MRPL20 NADK
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss AGRN FAM132A KLHL17 LOC100288175 LOC100130417 LOC107985728 TNFRSF18 FAM41C C1orf159 SDF4 MIR200A LINC00115 LINC01128 UBE2J2 PLEKHN1 SAMD11 ISG15 MIR200B LOC105378948 FAM87B LOC284600 MIR429 LINC01342 PERM1 RNF223 HES4 TNFRSF4 TTLL10-AS1 B3GALT6 NOC2L TTLL10
nsv1013524 Chr.1:939510 - 1161955 on Build GRCh38 Gain AGRN KLHL17 LOC100288175 C1orf159 LINC01342 PERM1 RNF223 HES4 PLEKHN1 NOC2L SAMD11 ISG15 LOC105378948
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain AGRN FAM132A KLHL17 LOC100288175 LOC100130417 LOC107985728 TNFRSF18 C1orf159 SDF4 DVL1 MIR200A ANKRD65 LOC148413 AURKAIP1 UBE2J2 PLEKHN1 SAMD11 ISG15 MIR200B LOC105378948 LOC284600 MIR429 SCNN1D LINC01342 PERM1 CPTP RNF223 HES4 TAS1R3 MIR6726 TNFRSF4 MIR6727 TMEM88B TTLL10-AS1 MIR6808 CCNL2 B3GALT6 NOC2L TTLL10 ACAP3 MXRA8 CPSF3L MRPL20 PUSL1
nsv544895 Chr.1:917392 - 1054900 on Build GRCh38 Loss AGRN KLHL17 LOC100130417 LOC107985728 LOC284600 PLEKHN1 NOC2L SAMD11 PERM1 ISG15 HES4
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion AGRN KLHL17 LOC100288175 TNFRSF18 MIR429 C1orf159 LINC01342 PERM1 SDF4 RNF223 MIR200A HES4 TNFRSF4 TTLL10-AS1 PLEKHN1 NOC2L SAMD11 ISG15 MIR200B TTLL10 LOC105378948
nsv832980 Chr.1:848279 - 1007037 on Build GRCh38 Gain KLHL17 LOC100130417 LOC107985728 FAM41C LOC284600 PLEKHN1 NOC2L SAMD11 PERM1 HES4 LINC01128

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Process(es)


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