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See other SDF4 CNV Assays ›
Gene Symbol
SDF4
Assay Reference Genome
Location

Chr.1:1222704 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03338848_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 51150

Gene Name:

 stromal cell derived factor 4

Gene Aliases:

 Cab45, SDF-4

Location:

 Chr.1:1216908-1232067 on Build GRCh38

Assay Gene Location:

 Within Intron 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SDF4 NM_016176.3 NP_057260.2
NM_016547.2 NP_057631.1
XM_011541556.1 XP_011539858.1
AF132749.1 AAL75950.1
AF153686.1 AAD51612.1
AF178986.1 AAF44350.1
AK000717.1
AK027277.1 BAB55012.1
AK075352.1 BAC11563.1
AK222521.1 BAD96241.1
AK223079.1 BAD96799.1
AK299810.1
AK315517.1
BC006211.2 AAH06211.1
BC007625.1 AAH07625.1
BC008917.2 AAH08917.1
BC011244.1 AAH11244.1
BC022375.1 AAH22375.1
L79912.1 AAL40084.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication MIR200A ACAP3 TNFRSF4 TNFRSF18 SCNN1D CPSF3L AGRN LINC01342 TTLL10 MIR6727 CPTP MIR429 MIR6726 SDF4 RNF223 B3GALT6 FAM132A TTLL10-AS1 MIR200B LOC105378948 TAS1R3 PUSL1 UBE2J2 C1orf159 LOC100288175
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss HES4 MIR200A MIB2 ACAP3 TNFRSF4 MRPL20 MXRA8 PERM1 VWA1 SCNN1D CPSF3L AGRN SLC35E2B TTLL10 LOC148413 MIR6727 SSU72 NADK MIR429 MIR6726 KLHL17 CDK11B SDF4 RNF223 LOC100130417 LINC01128 LOC100288069 ANKRD65 SAMD11 FAM132A LOC102724312 TTLL10-AS1 MIR6808 LOC105378948 AURKAIP1 PUSL1 TMEM88B LINC00115 UBE2J2 ATAD3B FAM41C LOC100287934 C1orf159 ATAD3A LOC107985728 LOC100288175 ATAD3C LOC107985729 SLC35E2 CCNL2 ISG15 TNFRSF18 DVL1 LINC01342 TMEM240 FAM87B CDK11A CPTP MMP23B B3GALT6 MMP23A MIR200B LOC284600 TAS1R3 PLEKHN1 NOC2L FNDC10
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss GNB1 MIR200A MIB2 ACAP3 TNFRSF4 MRPL20 MXRA8 AGRN LOC102725121 SLC35E2B PRKCZ TTLL10 CFAP74 LOC148413 MIR6727 SSU72 LOC100133331 LOC105378947 LOC100288069 ANKRD65 SAMD11 MTND2P28 LOC102724312 OR4F16 FAM138A AURKAIP1 TMEM88B LINC00115 UBE2J2 LOC107984841 ATAD3B FAM41C LOC100287934 LOC107985728 ATAD3C MIR1302-2 LOC107985729 LOC729737 LOC100132287 ISG15 DVL1 LINC01342 MTND1P23 OR4F5 FAM87B CDK11A CPTP DDX11L1 MIR200B PLEKHN1 NOC2L CALML6 FAAP20 LOC105378949 HES4 MIR6859-1 WASH7P LOC105378592 PERM1 LOC100506504 MIR6723 VWA1 SCNN1D SKI CPSF3L NADK MIR429 MIR6726 GABRD KLHL17 CDK11B SDF4 RNF223 LOC100130417 LINC01128 FAM132A TTLL10-AS1 MIR6808 LOC105378948 PUSL1 OR4F29 LOC100129534 C1orf159 ATAD3A LOC100288175 LOC105378591 SLC35E2 CCNL2 TNFRSF18 TMEM240 TMEM52 MORN1 LOC105378589 MIR6859-2 MMP23B B3GALT6 MMP23A LOC101928626 LOC284600 TAS1R3 LOC100134822 FNDC10
nsv544965 Chr.1:1217251 - 1306704 on Build GRCh38 Loss UBE2J2 FAM132A ACAP3 MIR6726 SDF4 SCNN1D B3GALT6
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss HES4 MIR200A TNFRSF4 PERM1 ISG15 TNFRSF18 AGRN LINC01342 TTLL10 FAM87B MIR429 KLHL17 SDF4 RNF223 LOC100130417 B3GALT6 LINC01128 SAMD11 FAM132A TTLL10-AS1 MIR200B LOC105378948 LOC284600 PLEKHN1 NOC2L LINC00115 UBE2J2 FAM41C C1orf159 LOC107985728 LOC100288175
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion MIR200A MIB2 ATAD3C LOC107985729 ACAP3 TNFRSF4 MRPL20 CCNL2 MXRA8 TNFRSF18 VWA1 SCNN1D CPSF3L DVL1 LINC01342 TTLL10 TMEM240 LOC148413 MIR6727 SSU72 CPTP MIR429 MIR6726 CDK11B SDF4 MMP23B B3GALT6 ANKRD65 FAM132A LOC102724312 TTLL10-AS1 MIR6808 MIR200B TAS1R3 AURKAIP1 PUSL1 TMEM88B UBE2J2 ATAD3B FNDC10 C1orf159 ATAD3A
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain HES4 MIR200A ACAP3 TNFRSF4 MRPL20 CCNL2 MXRA8 PERM1 ISG15 TNFRSF18 SCNN1D CPSF3L AGRN DVL1 LINC01342 TTLL10 LOC148413 MIR6727 CPTP MIR429 MIR6726 KLHL17 SDF4 RNF223 LOC100130417 B3GALT6 ANKRD65 SAMD11 FAM132A TTLL10-AS1 MIR6808 MIR200B LOC105378948 LOC284600 TAS1R3 AURKAIP1 PUSL1 TMEM88B PLEKHN1 NOC2L UBE2J2 C1orf159 LOC107985728 LOC100288175
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain MIR200A FAM132A TNFRSF4 TTLL10-AS1 TNFRSF18 SCNN1D MIR200B LOC105378948 LINC01342 TTLL10 UBE2J2 MIR429 SDF4 RNF223 C1orf159 B3GALT6
nsv544947 Chr.1:1070426 - 1306704 on Build GRCh38 Loss MIR200A FAM132A ACAP3 TNFRSF4 TTLL10-AS1 TNFRSF18 SCNN1D MIR200B LINC01342 TTLL10 UBE2J2 MIR429 MIR6726 SDF4 RNF223 C1orf159 B3GALT6
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain MIR200A FAM132A ACAP3 TNFRSF4 TTLL10-AS1 TNFRSF18 SCNN1D CPSF3L MIR200B PUSL1 TTLL10 MIR6727 UBE2J2 MIR429 MIR6726 SDF4 B3GALT6
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TTLL10 TNFRSF4 SDF4 TTLL10-AS1 TNFRSF18 B3GALT6

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