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See other CPSF3L CNV Assays ›
Gene Symbol
CPSF3L
Assay Reference Genome
Location

Chr.1:1317629 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03338997_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 54973

Gene Name:

 cleavage and polyadenylation specific factor 3-like

Gene Aliases:

 CPSF73L, INT11, INTS11, RC-68, RC68

Location:

 Chr.1:1311585-1324687 on Build GRCh38

Assay Gene Location:

 Within Intron 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CPSF3L NM_001256456.1 NP_001243385.1
NM_001256460.1 NP_001243389.1
NM_001256462.1 NP_001243391.1
NM_001256463.1 NP_001243392.1
NM_017871.5 NP_060341.2
XM_011541647.1 XP_011539949.1
XM_011541648.1 XP_011539950.1
XM_011541650.1 XP_011539952.1
XM_017001557.1 XP_016857046.1
XM_017001558.1 XP_016857047.1
AK021939.1 BAB13943.1
AK023356.1 BAB14541.1
AK056652.1
AK058018.1
AK092190.1
AK291387.1
AK297350.1
AL136813.1 CAB66747.1
BC000675.2 AAH00675.2
BC007978.2 AAH07978.1
BC008041.2 AAH08041.1
BC020199.1 AAH20199.1
CR533557.1 CAG38588.1
DC295791.1
DC299237.1
DC299993.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss ATAD3B TAS1R3 TMEM52 LOC100133331 SSU72 AURKAIP1 LOC107984841 LOC105378592 LINC00115 MORN1 CDK11B SKI KLHL17 UBE2J2 FAM138A VWA1 FAM87B ACAP3 SAMD11 PUSL1 WASH7P AGRN CDK11A MIR200A MMP23B ISG15 LINC01128 LOC284600 FAAP20 MIR200B MXRA8 B3GALT6 LOC105378949 GABRD SCNN1D TTLL10-AS1 ANKRD65 SLC35E2B LOC100287934 FNDC10 MIR6726 OR4F29 LOC107985729 MRPL20 SDF4 HES4 LOC107985728 C1orf159 MIR6723 LOC729737 LOC100134822 GNB1 TMEM240 OR4F16 DVL1 CFAP74 MTND1P23 MIB2 LOC100129534 LOC102724312 LOC101928626 LOC105378948 MIR6727 LINC01342 TNFRSF4 TNFRSF18 ATAD3C CPTP LOC100288069 DDX11L1 CCNL2 MIR6808 FAM132A MTND2P28 LOC148413 PERM1 LOC102725121 MMP23A PRKCZ NADK FAM41C ATAD3A MIR1302-2 LOC105378947 LOC105378591 TTLL10 MIR6859-1 CALML6 LOC105378589 RNF223 PLEKHN1 SLC35E2 NOC2L LOC100288175 LOC100132287 MIR429 CPSF3L LOC100506504 OR4F5 TMEM88B LOC100130417 MIR6859-2
nsv544971 Chr.1:1294063 - 1351426 on Build GRCh38 Loss TAS1R3 PUSL1 MIR6726 MIR6808 DVL1 CPSF3L CPTP ACAP3 MIR6727
nsv544969 Chr.1:1290683 - 1374597 on Build GRCh38 Loss MXRA8 TAS1R3 PUSL1 MIR6726 MIR6808 DVL1 SCNN1D AURKAIP1 CPSF3L CPTP ACAP3 MIR6727
dgv7n100 Chr.1:1306835 - 1379057 on Build GRCh38 Loss MXRA8 TAS1R3 PUSL1 MIR6808 DVL1 AURKAIP1 CPSF3L CPTP ACAP3 MIR6727
nsv470680 Chr.1:1070426 - 1378635 on Build GRCh38 Loss MIR200B MXRA8 TAS1R3 B3GALT6 SCNN1D AURKAIP1 TTLL10-AS1 MIR6727 LINC01342 TTLL10 TNFRSF4 TNFRSF18 MIR6726 RNF223 UBE2J2 CPTP SDF4 ACAP3 C1orf159 PUSL1 MIR429 CPSF3L MIR200A MIR6808 FAM132A DVL1
dgv6n100 Chr.1:1301750 - 1362354 on Build GRCh38 Gain+Loss MXRA8 TAS1R3 PUSL1 MIR6808 DVL1 CPSF3L CPTP ACAP3 MIR6727
esv3584992 Chr.1:1314419 - 1330342 on Build GRCh38 Gain CPSF3L CPTP
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication MIR200B TAS1R3 B3GALT6 SCNN1D LOC105378948 TTLL10-AS1 MIR6727 LINC01342 TTLL10 TNFRSF4 TNFRSF18 MIR6726 RNF223 UBE2J2 CPTP SDF4 ACAP3 LOC100288175 C1orf159 PUSL1 MIR429 CPSF3L AGRN MIR200A FAM132A
nsv1160788 Chr.1:1282706 - 1376336 on Build GRCh38 Deletion MXRA8 TAS1R3 PUSL1 MIR6726 MIR6808 DVL1 SCNN1D AURKAIP1 CPSF3L CPTP ACAP3 MIR6727
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss ATAD3B TAS1R3 MIB2 SSU72 AURKAIP1 LOC102724312 LOC105378948 MIR6727 LINC00115 LINC01342 CDK11B TNFRSF4 TNFRSF18 ATAD3C KLHL17 UBE2J2 CPTP VWA1 FAM87B ACAP3 SAMD11 PUSL1 LOC100288069 AGRN CCNL2 CDK11A MIR200A MIR6808 FAM132A MMP23B LOC148413 PERM1 MMP23A ISG15 LINC01128 LOC284600 MIR200B MXRA8 B3GALT6 NADK SCNN1D FAM41C ATAD3A TTLL10-AS1 ANKRD65 TTLL10 SLC35E2B LOC100287934 FNDC10 MIR6726 LOC107985729 RNF223 PLEKHN1 MRPL20 SLC35E2 NOC2L SDF4 HES4 LOC100288175 LOC107985728 C1orf159 MIR429 CPSF3L TMEM240 TMEM88B DVL1 LOC100130417
esv3890636 Chr.1:1304555 - 1353203 on Build GRCh38 Loss MXRA8 TAS1R3 PUSL1 MIR6808 DVL1 CPSF3L CPTP ACAP3 MIR6727
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion MIR200B ATAD3B MXRA8 TAS1R3 B3GALT6 MIB2 SSU72 SCNN1D AURKAIP1 LOC102724312 ATAD3A TTLL10-AS1 ANKRD65 MIR6727 LINC01342 TTLL10 CDK11B TNFRSF4 TNFRSF18 ATAD3C FNDC10 MIR6726 LOC107985729 UBE2J2 MRPL20 CPTP VWA1 SDF4 ACAP3 C1orf159 PUSL1 MIR429 CPSF3L CCNL2 TMEM240 TMEM88B MIR200A MIR6808 FAM132A DVL1 MMP23B LOC148413
nsv1000169 Chr.1:1281678 - 1362354 on Build GRCh38 Gain MXRA8 TAS1R3 PUSL1 MIR6726 MIR6808 DVL1 SCNN1D CPSF3L CPTP ACAP3 MIR6727
esv2758912 Chr.1:1263940 - 1384492 on Build GRCh38 Loss MXRA8 TAS1R3 PUSL1 SCNN1D AURKAIP1 CPSF3L MIR6727 MIR6726 MIR6808 DVL1 UBE2J2 CPTP ACAP3
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain MIR200B MXRA8 TAS1R3 B3GALT6 SCNN1D AURKAIP1 LOC105378948 TTLL10-AS1 ANKRD65 MIR6727 LINC01342 TTLL10 TNFRSF4 TNFRSF18 KLHL17 MIR6726 RNF223 UBE2J2 PLEKHN1 MRPL20 CPTP NOC2L SDF4 HES4 ACAP3 LOC100288175 LOC107985728 SAMD11 C1orf159 PUSL1 MIR429 CPSF3L AGRN CCNL2 TMEM88B MIR200A MIR6808 FAM132A DVL1 LOC148413 PERM1 ISG15 LOC100130417 LOC284600
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain MIR200B B3GALT6 PUSL1 MIR429 SCNN1D CPSF3L TTLL10-AS1 MIR6727 TTLL10 TNFRSF4 TNFRSF18 MIR200A MIR6726 FAM132A UBE2J2 SDF4 ACAP3

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

RNA processing factor

Gene Ontology Categories:

Function(s) Process(es)


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