Hs03340743_cn

• Gene Symbol: FAAP20
• Assay Reference Genome Location: Chr.1:2208953 on build GRCh38
• Cytoband: 1p36.33

Target Gene Details

• Entrez Gene ID: 199990
• Gene Name: Fanconi anemia core complex associated protein 20
• Gene Aliases: C1orf86, FP7162
• Location: Chr.1:2184460-2212720 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FAAP20	NM_001282670.1			NP_001269599.1
	AK126870.1			BAC86730.1

Target Gene Details

• Entrez Gene ID: 105378592
• Gene Name: uncharacterized LOC105378592
• Gene Aliases: -
• Location: Chr.1:2207597-2215193 on Build GRCh38
• Assay Gene Location: Within Intron 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC105378592	XM_017003076.1			XP_016858565.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv482937	Chr.1:10001 - 2368561 on Build GRCh38	Loss	CDK11B B3GALT6 MMP23B LINC01342 LOC105378592 DVL1 MXRA8 LOC105378591 FAM132A SDF4 OR4F16 CALML6 FNDC10 LOC102724312 ISG15 GNB1 FAM41C PUSL1 TMEM52 MIB2 MRPL20 ATAD3B LOC107985729 LINC01128 NADK TNFRSF18 CFAP74 TNFRSF4 PERM1 LOC105378947 LOC107985728 LOC148413 ACAP3 OR4F29 TMEM240 MORN1 HES4 SCNN1D TAS1R3 LOC105378589 ATAD3A MIR6859-1 MIR6723 LOC100506504 LOC100288175 MMP23A LOC105378949 SSU72 CPTP TTLL10 WASH7P ATAD3C AURKAIP1 OR4F5 MIR429 MTND1P23 MIR200B FAM138A SKI SLC35E2 VWA1 LOC107984841 SLC35E2B LOC284600 SAMD11 DDX11L1 NOC2L AGRN LOC102725121 LINC00115 FAAP20 CPSF3L ANKRD65 CDK11A GABRD LOC729737 LOC101928626 MIR6727 LOC100287934 LOC100130417 MIR6808 LOC100134822 MIR6726 LOC100133331 RNF223 TTLL10-AS1 MIR1302-2 PLEKHN1 MIR200A KLHL17 CCNL2 LOC100132287 UBE2J2 LOC100129534 MTND2P28 PRKCZ TMEM88B LOC105378948 C1orf159 LOC100288069 MIR6859-2 FAM87B
dgv49n54	Chr.1:2151050 - 2289783 on Build GRCh38	Loss	PRKCZ LOC105378592 SKI LOC100506504 FAAP20
nsv951530	Chr.1:2153662 - 2229961 on Build GRCh38	Deletion	PRKCZ LOC105378592 SKI LOC100506504 FAAP20
nsv470682	Chr.1:2188394 - 2378754 on Build GRCh38	Loss	LOC105378592 MORN1 LOC100129534 SKI FAAP20
nsv834557	Chr.1:2117631 - 2311104 on Build GRCh38	Loss	PRKCZ LOC105378592 SKI LOC100506504 FAAP20
nsv818111	Chr.1:2208822 - 2224923 on Build GRCh38	Loss	LOC105378592 FAAP20

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cellular response to DNA damage stimulus
translesion synthesis
interstrand cross-link repair

Function(s)

protein binding
polyubiquitin binding
ubiquitin binding
metal ion binding
K63-linked polyubiquitin binding