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See other SSU72 CNV Assays ›
Gene Symbol
SSU72
Assay Reference Genome
Location

Chr.1:1546212 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03347694_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 29101

Gene Name:

 SSU72 homolog, RNA polymerase II CTD phosphatase

Gene Aliases:

 HSPC182, PNAS-120

Location:

 Chr.1:1541673-1574882 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SSU72 NM_014188.2 NP_054907.1
AF161530.1 AAF29145.1
AF277178.1 AAK07538.1
AJ276409.1 CAC81713.1
AK001809.1 BAA91921.1
AK127149.1 1 276
AK297505.1
AK310067.1
BC008070.2 AAH08070.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv545000 Chr.1:1421170 - 1573654 on Build GRCh38 Loss VWA1 LOC107985729 ANKRD65 ATAD3B LOC102724312 ATAD3C ATAD3A TMEM240 SSU72 TMEM88B
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss LOC107985729 MIB2 TNFRSF18 C1orf159 CCNL2 LOC100288069 ATAD3B UBE2J2 AGRN LOC148413 SDF4 FAM87B MMP23B NOC2L ATAD3C ATAD3A SSU72 TTLL10-AS1 TNFRSF4 RNF223 SAMD11 NADK MXRA8 MIR200B SLC35E2B TTLL10 MRPL20 PERM1 MMP23A FAM132A MIR6808 AURKAIP1 KLHL17 LINC01342 LOC107985728 LOC100130417 PLEKHN1 FAM41C CDK11A SLC35E2 CPTP CPSF3L LINC00115 TMEM88B VWA1 LINC01128 ISG15 MIR429 DVL1 PUSL1 MIR6726 MIR6727 LOC284600 LOC102724312 SCNN1D LOC105378948 CDK11B B3GALT6 LOC100287934 ACAP3 FNDC10 ANKRD65 HES4 TMEM240 TAS1R3 MIR200A LOC100288175
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC100132287 MIB2 OR4F16 LOC100288069 UBE2J2 LOC148413 SDF4 FAM87B MMP23B LOC100506504 NOC2L SSU72 RNF223 SAMD11 MIR6723 TMEM52 MXRA8 SLC35E2B MRPL20 FAM132A MIR6808 LOC102725121 OR4F29 AURKAIP1 LOC100133331 LOC101928626 LINC01342 LOC100130417 PLEKHN1 FAM41C LOC105378589 CPTP CPSF3L LINC00115 CFAP74 VWA1 LINC01128 ISG15 MIR429 FAM138A MIR6726 LOC105378949 MIR6727 LOC105378947 LOC102724312 B3GALT6 LOC100287934 ACAP3 ANKRD65 HES4 TMEM240 TAS1R3 MIR200A LOC100288175 LOC107985729 MTND1P23 TNFRSF18 C1orf159 CCNL2 WASH7P ATAD3B AGRN CALML6 MIR6859-1 PRKCZ ATAD3C ATAD3A TTLL10-AS1 TNFRSF4 MIR1302-2 NADK DDX11L1 FAAP20 MIR200B TTLL10 MIR6859-2 PERM1 MMP23A KLHL17 LOC107985728 LOC729737 CDK11A SLC35E2 LOC100134822 MTND2P28 TMEM88B DVL1 OR4F5 PUSL1 GNB1 SKI GABRD LOC100129534 MORN1 LOC284600 LOC105378592 SCNN1D LOC105378948 CDK11B FNDC10 LOC107984841 LOC105378591
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion LOC107985729 MIB2 TNFRSF18 C1orf159 CCNL2 CPTP ATAD3B UBE2J2 CPSF3L LOC148413 TMEM88B SDF4 VWA1 MIR429 DVL1 PUSL1 MMP23B ATAD3C MIR6726 ATAD3A SSU72 TTLL10-AS1 TNFRSF4 MIR6727 LOC102724312 SCNN1D CDK11B B3GALT6 MXRA8 MIR200B ACAP3 FNDC10 TTLL10 MRPL20 ANKRD65 FAM132A MIR6808 AURKAIP1 TMEM240 TAS1R3 MIR200A LINC01342
nsv1011818 Chr.1:1394332 - 1575421 on Build GRCh38 Gain LOC107985729 CCNL2 ATAD3B LOC102724312 LOC148413 TMEM88B VWA1 MRPL20 ANKRD65 ATAD3C ATAD3A TMEM240 SSU72
esv2758913 Chr.1:1389149 - 2092899 on Build GRCh38 Gain+Loss LOC107985729 LOC105378589 MIB2 CCNL2 CDK11A SLC35E2 ATAD3B CALML6 CFAP74 LOC148413 TMEM88B VWA1 MMP23B PRKCZ ATAD3C ATAD3A GNB1 SSU72 LOC105378949 GABRD NADK LOC102724312 TMEM52 CDK11B FNDC10 SLC35E2B MRPL20 MMP23A ANKRD65 LOC105378591 TMEM240

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

protein phosphatase

Gene Ontology Categories:

Function(s) Process(es)


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